rs32416050 SNP Detail

Summary

• ID
  rs32416050
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:31652261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAGCCC GCAGGCCGCC
  GGGCGATCCC TGAGTGGTGG GCGTGGCTGA GGAAAGATGG CGGCGCCCGT GGCTCCATCC
  GAACCCCAGG CTTCCCGGGC TCCTCAGCCC CCCGTGTGTC TGTTGGTGTT GGGAATGGCG
  GGATCCGGGA AAACTACCTT TGTACAGGTG ACGTGCACCG TGCAGAAGCG GTAGTGGCGC
  M
  TCAGGCCCGG GAAGAAGGGA GGAAGTTGTC TGGGGAATCT GCGGGTCCGG GCGCGTGGTT
  TTCTCGAGCT GTCCTCTGAC TCCTTTCCTT CCCGAAGCCT CGAACCCTAG CCTGGGTCAC
  TTGAGGCCGG CTCCTGGGCA ACCTTAATGC ACACTTGGTA CAGCTGAACT TGTCTTGCTG
  CGAATTGGCA GCTTTCCGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47664450	NES10261864	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32416050					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47664450	NES10261864	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31652261 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930566F21Rik	RIKEN cDNA 4930566F21 gene			within coordinates
Cpgi15713	CpG island 15713			within coordinates
Gpn1	GPN-loop GTPase 1			Intron
				mRNA-UTR
Rr399021	regulatory region 399021			163 bp downstream
Rr609208	regulatory region 609208			154 bp distal
Rr609209	regulatory region 609209			228 bp proximal
Rr609210	regulatory region 609210			1661 bp proximal
Tssr1449	transcription start site region 1449			110 bp downstream
Tssr45712	transcription start site region 45712			139 bp downstream