rs32416389 SNP Detail

Summary

• ID
  rs32416389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19243737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGATTTT TTGGGAGGGT
  GGGGGTGGGG GGGTTCGAAA CAGGGTTTCT CTGTGTAGCC CTGGCTGTCC TGGAACTCAC
  TCTGTAGACC AGGCTAGCCT CAACTCAGAA ATTCACCTGC CTCTGCCTCC CAAGTGCTGG
  GATTAAAGGC GTGTGCCACC ACGCCCGGCT GCCTCCCTGA TTTTATAGGC TACATGGCAG
  Y
  TTGAACTTCC ATGACTGTGT GGGAGTTCAA GACCTGCTGC AGAGACTGCT CTGCTCTCTC
  TTTTCTTCCC TGAGTATCCC TACGCCAACC CGACTCTTGA AGCAGGTTTT CACTGTATGA
  CCCAAGCTGG CTTCTGGTGA TCCTCCTGCC TCTGCCTGAA AAGTACTAGG ATTATGGGCC
  CTCCCGTGTC TGGTTTGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48163081	NES11826147	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	C	T	T	T	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32416389					SNP	C	T	T	T	C	C	T	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163081	NES11826147	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19243737 () rs orientation: forward

Symbol	Name	Function Class
Bloc1s3	biogenesis of lysosomal organelles complex-1, subunit 3	1442 bp upstream
Cpgi18495	CpG island 18495	680 bp distal
Gm74038	predicted gene, 74038	1676 bp downstream
Rr167175	regulatory region 167175	within coordinates
Rr400150	regulatory region 400150	989 bp downstream
Trappc6a	trafficking protein particle complex 6A	within coordinates
Tssr64864	transcription start site region 64864	1071 bp downstream
Tssr64865	transcription start site region 64865	1058 bp downstream
Tssr64866	transcription start site region 64866	1041 bp downstream
Tssr70925	transcription start site region 70925	1508 bp upstream
Tssr70926	transcription start site region 70926	1435 bp upstream
Tssr70927	transcription start site region 70927	1423 bp upstream