rs32416816 SNP Detail

Summary

• ID
  rs32416816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:31652090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCTGCAA GTCAGATGCC
  AAAAGCCGGT CAGGCACCCA CTGCAGTAGG TTCGAGCGGT TTGGATAGTC TGGCCAATCG
  CAACCCTAAA CTCAGAGAGG CCGGATCGTT CGACCAATCG TAGCCCTGTA CGCAAGAGGA
  CGGATTTTCC TACCAATCGC AGCCCGGAAT TCAGAGAGCC CGCAGGCCGC CGGGCGATCC
  Y
  TGAGTGGTGG GCGTGGCTGA GGAAAGATGG CGGCGCCCGT GGCTCCATCC GAACCCCAGG
  CTTCCCGGGC TCCTCAGCCC CCCGTGTGTC TGTTGGTGTT GGGAATGGCG GGATCCGGGA
  AAACTACCTT TGTACAGGTG ACGTGCACCG TGCAGAAGCG GTAGTGGCGC CTCAGGCCCG
  GGAAGAAGGG AGGAAGTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47664456	NES10261862	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32416816					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47664456	NES10261862	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31652090 () rs orientation: forward

Symbol	Name	Function Class
4930566F21Rik	RIKEN cDNA 4930566F21 gene	within coordinates
Cpgi15713	CpG island 15713	within coordinates
Gpn1	GPN-loop GTPase 1	mRNA-UTR
Rr399021	regulatory region 399021	within coordinates
Rr609208	regulatory region 609208	within coordinates
Rr609209	regulatory region 609209	399 bp proximal
Rr609210	regulatory region 609210	1832 bp proximal
Tssr1449	transcription start site region 1449	53 bp upstream
Tssr45712	transcription start site region 45712	within coordinates