rs32416819 SNP Detail

Summary

• ID
  rs32416819
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31651931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATAGGAT CCTGACAGAT
  CCTGGCTTGG GAATCCCACC TCATTACTCC CTTGGGGACA CGAGCTTAAC CCTTTCCGGG
  TCCTATCTCA CTCCTGTCAA CCCTTCCTGG TTCCCTACAC TACCCCTCAC TTGTGCAAAG
  CCACTATAGC ATCAAAGTGA CCCCTGCAAG TCAGATGCCA AAAGCCGGTC AGGCACCCAC
  K
  GCAGTAGGTT CGAGCGGTTT GGATAGTCTG GCCAATCGCA ACCCTAAACT CAGAGAGGCC
  GGATCGTTCG ACCAATCGTA GCCCTGTACG CAAGAGGACG GATTTTCCTA CCAATCGCAG
  CCCGGAATTC AGAGAGCCCG CAGGCCGCCG GGCGATCCCT GAGTGGTGGG CGTGGCTGAG
  GAAAGATGGC GGCGCCCGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss47664459	NES10261860	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs32416819					SNP	T	T	T	T	T	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47664459	NES10261860	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31651931 () rs orientation: forward

Symbol	Name	Function Class
4930566F21Rik	RIKEN cDNA 4930566F21 gene	within coordinates
Cpgi15713	CpG island 15713	within coordinates
Gpn1	GPN-loop GTPase 1	154 bp upstream
Rr399021	regulatory region 399021	within coordinates
Rr609208	regulatory region 609208	within coordinates
Rr609209	regulatory region 609209	558 bp proximal
Rr609210	regulatory region 609210	1991 bp proximal
Tssr1449	transcription start site region 1449	212 bp upstream
Tssr45712	transcription start site region 45712	149 bp upstream