rs32417538 SNP Detail

Summary

• ID
  rs32417538
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31651714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCACACTT CAGCCACAAA
  CGCTGTAAGG TTCTTTAGTC CCCTTTGCAT TAGGCAATGA TTGCCAGAAA ATGTATCTTC
  CTCTGTTAAA GTACAGTATT CATGCTATCT TTCAAGTGTT ACGCTAATTT TTACCTAATA
  TTTTCTAGAA CATAATGACG TTTAATTTTT TTCTTCTTCT TCTTAGACAA TAAAATAAAA
  S
  GTAGAGCAAC ACCTTTGTTA TAGGATCCTG ACAGATCCTG GCTTGGGAAT CCCACCTCAT
  TACTCCCTTG GGGACACGAG CTTAACCCTT TCCGGGTCCT ATCTCACTCC TGTCAACCCT
  TCCTGGTTCC CTACACTACC CCTCACTTGT GCAAAGCCAC TATAGCATCA AAGTGACCCC
  TGCAAGTCAG ATGCCAAAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47664468	NES10261851	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32417538					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47664468	NES10261851	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31651714 () rs orientation: forward

Symbol	Name	Function Class
4930566F21Rik	RIKEN cDNA 4930566F21 gene	within coordinates
Cpgi15713	CpG island 15713	104 bp proximal
Gpn1	GPN-loop GTPase 1	371 bp upstream
Rr399021	regulatory region 399021	83 bp upstream
Rr609208	regulatory region 609208	within coordinates
Rr609209	regulatory region 609209	775 bp proximal
Tssr1449	transcription start site region 1449	429 bp upstream
Tssr45712	transcription start site region 45712	366 bp upstream