rs32419280 SNP Detail

Summary

• ID
  rs32419280
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:185153995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTGTAG CCCTGGCTGT
  CCTGGAACTC ACTCTATAGA CCAGGCTGGC CTCGAACTCA GAAATCTGCC TGCCTCTGCC
  TCCCAAGTGC TGGGATTAAA GGTGTGTGCC ACCACGCCCG GCCATAAAAG TAGCTTGAAT
  AGTTATTTTA GGATTTGTTT GGTTTCTGGA TAACATGATA CGTTTAGTGT CTCTGCACTG
  S
  GAGCGGGTAG TGTTGTGGGT GAGGCATTGG GAAGCTGCCT GCCCTCGCTG CTCTCAGTGC
  TTCTCTGTTC TCAGTCTCCT GGAACTTGAG GCACTGAGAG TGCTGAACTT CATACCTAGA
  AATCCTGACT GTGTTGTTTT AAGATAAATT TCTGGTTGGT TAGGGTTTCT CTCCTGTGAT
  TCATGTCGTG TCTCAGGATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45145256	mCV24553199	ABI	CRAMUS_MOUSE	f	SNP	G	G	C					C
ss46731583	NES10640046	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	C	G	C		G	C	C	G		G	G	C		C
ss146431955	ENSMUSSNP4838498	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C
ss320175619	CHEV_1_187245677	CHEVERUD	SCREENING_POP	f	SNP													G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32419280					SNP	G	G	C	G	C	G	C	C	G	C	C	G	G	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46731583	NES10640046	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185153995 () rs orientation: forward

Symbol	Name	Function Class
Eprs1	glutamyl-prolyl-tRNA synthetase 1	Intron
Rr425383	regulatory region 425383	732 bp distal