rs32420618 SNP Detail

Summary

• ID
  rs32420618
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19305518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATGAGGC TCTAATTAAA
  GAAGATTTAA TCATACCTAG AAGCCCCATT TGCTGGAATG GACCTGAGGC TAGATCTCAC
  TTTGCTGGGT CCAGGCTGGC AGGTGTCAGA AAAAGGCAGC TAACTGTGAG CATTGGAGCA
  GGTGTTTTCT CCTGGTCTTT CCTGCTAACA CAATTGGGCC CTGGACTGTC TGGAGACAAG
  R
  TGGGAAGATT TAAGAAAACA AAAACTGATA TATGCTGGGT TTGGTGATGC ATGCCCTTAA
  GCCCAGTGCT TGGGAGACAG AGACAGGTGG GGTCTCTTGC GTTTAAAGCC AGCCTAGTCT
  ACAGAGTGAG TTCTAGGACA GCCAAGGCTA CATACAGAGA AACCCTGCTG AAAAAACAAC
  AACAAGGATT TGAGAAAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48163404	NES11822168	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	G	A	A	A	G	G	G	G	A
ss148479036	ENSMUSSNP421664	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32420618					SNP	G	G	A	A	A	G	G	A	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163404	NES11822168	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19305518 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	1390 bp proximal
Gemin7	gem nuclear organelle associated protein 7	within coordinates
Rr380485	regulatory region 380485	639 bp upstream
Rr643192	regulatory region 643192	525 bp distal
Rr643193	regulatory region 643193	943 bp proximal
Rr643194	regulatory region 643194	1365 bp proximal
Tssr70933	transcription start site region 70933	1764 bp downstream
Tssr70934	transcription start site region 70934	1779 bp downstream
Tssr70935	transcription start site region 70935	1786 bp downstream