rs32420816 SNP Detail

Summary

• ID
  rs32420816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:75597530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACAAGCT ATCACAGGAC
  ACACTCAGCA AACGGCCAGA AGCATTCCGG TACTGCTCAA TACTTCCTCT GACATAAACT
  TTAGTAAATG TTATTTTCCT ATATACTTAG AAGATAACGT ATTTGTTGTT TGGTAAAACT
  TTGGGCAACC ATTGACTCTG ACAACTTAGT AAGCAAAACT AATCATCAGA AACAAAGCTA
  Y
  AATCTTTTCT AACAGCATTT TTAAGTAGGA TGAAAGGACC TGCTGTGGTT CCTTGAGAAG
  ACTCCCCAAA CACACAAGGT CTTGGGCACT GGAAGCCTTG GTTGATGGCT GCTTGGGAGG
  GATCAGGAGA TGTAGCCTTG TTAGAGAAGG TGTGTCACTG GGGTGGTCTT AGGTTTCAAA
  GCCTCCTTCC ATCCCCAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47164626	NES11244049	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32420816					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47164626	NES11244049	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:75597530 () rs orientation: forward

Symbol	Name	Function Class
Gm59526	predicted gene, 59526	within coordinates
Ppp2r5e	protein phosphatase 2, regulatory subunit B', epsilon	within coordinates
Rr467982	regulatory region 467982	1572 bp proximal
Tssr116681	transcription start site region 116681	1116 bp upstream
Tssr116682	transcription start site region 116682	1095 bp upstream
Tssr116683	transcription start site region 116683	1061 bp upstream