rs32420899 SNP Detail

Summary

• ID
  rs32420899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100945979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCATCCA CACACTGGGC
  CCACACTTAT CTCACATCAT TTCCCAAGGT GGCTTGACTG TGGGCCCTAC TGTCTCATCC
  CTTCTGGGAG CCACGTACAA GCACAGTCAA CACACACATA TCCCCGGCCC CCTATCACAC
  CCAACACGCT GCTGTTAGAT CTTTTTACTG CCCTGCCCAT GAGAAGGAAG TCTTCACGTT
  R
  CTCCAACACT GACTAGTGCC CAAGTTTCAG GAAAGGCCTG TTGACTGCCT GTGTGAAGTT
  TTGTGAACCA GTCCCCTAGC CACAGCTACC TATACGCCTG TAAGTCGAGG CTTCATTGTA
  GTGTACCAGG CCTTAAGGGT AGCTTAGTCT CGCCTGACTC CTCTAGCCTC AGGTCTCCAC
  AATCTCGCCT CCATTTTATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39401237	mCV25401752	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss148481917	ENSMUSSNP5414841	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss325085115	CHEV_15_100878529	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32420899					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100945979 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7763	CpG island 7763	486 bp distal
Rr509881	regulatory region 509881	1250 bp distal
Rr509882	regulatory region 509882	211 bp distal
Tmdd1	transmembrane and death domain 1	701 bp upstream
Tssr136507	transcription start site region 136507	722 bp upstream
Tssr136508	transcription start site region 136508	713 bp upstream
Tssr136509	transcription start site region 136509	694 bp upstream
Tssr136510	transcription start site region 136510	669 bp upstream