rs32421256 SNP Detail

Summary

• ID
  rs32421256
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135301231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGT CTGGGTAGCT GGCATGAGGC
  R
  TGCTGGGATT TGTAGTGTGC CCACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45145550	mCV23630703	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss145532353	ENSMUSSNP2135033	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss319989528	CHEV_1_137270070	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32421256					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135301231 () rs orientation: forward

Symbol	Name	Function Class
Cpgi790	CpG island 790	943 bp proximal
Rr12587	regulatory region 12587	1970 bp proximal
Rr28595	regulatory region 28595	within coordinates
Rr28596	regulatory region 28596	369 bp proximal
Shisa4	shisa family member 4	within coordinates
Tssr13840	transcription start site region 13840	1605 bp upstream
Tssr13841	transcription start site region 13841	1161 bp upstream
Tssr13842	transcription start site region 13842	283 bp upstream
Tssr13843	transcription start site region 13843	72 bp upstream
Tssr13844	transcription start site region 13844	38 bp upstream
Tssr13845	transcription start site region 13845	10 bp upstream
Tssr13846	transcription start site region 13846	465 bp downstream
Tssr13847	transcription start site region 13847	926 bp downstream
Tssr13848	transcription start site region 13848	1426 bp downstream
Tssr13849	transcription start site region 13849	1443 bp downstream
Tssr13850	transcription start site region 13850	1462 bp downstream
Tssr13851	transcription start site region 13851	1606 bp downstream
Tssr13852	transcription start site region 13852	1730 bp downstream
Tssr13853	transcription start site region 13853	1740 bp downstream
Tssr13854	transcription start site region 13854	1757 bp downstream
Tssr13855	transcription start site region 13855	1775 bp downstream
Tssr13856	transcription start site region 13856	1789 bp downstream