rs32421461 SNP Detail

Summary

• ID
  rs32421461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19294218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAATTAA TAAAAGGCTC
  TGCCTTTTCA GAAAAACTGT GGGCCAGAAA CTGTGACCAA CTCTCCAGGT GCCCTGACCT
  CCAGGCCTCA CCATCTGACC CTCACCCTGG AAGGTTCTGA CTTTGGCCCC ATCGAAAAAG
  CAAGCTCTTT CCAGGCTTCA ATGCTGCCTT CATAATCATC ATGGGTTTAG GAGCGCTCAC
  Y
  CTCACCAGGC ACAGTTCATG TGTGATGTCA CTCAGTCTCT GGCAGACCCT GGACCACTGC
  TCCTGTCAGT CACTCTGGGG GAGGGTGGCT CTGAGGCTCA GGGGAGCCAG GCAAATTCTC
  AGTGGTTGCA AAAGACAGCA AGTGGGAAAG TCAGAATTTG ACCCAGCTAG CCTTTCTTTT
  CCCTCTTTTC TTTCTTTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48163322	NES11822872	PERLEGEN	MM_PANEL2	f	SNP		T	T	C	T	T	C	T	C	C
ss148478799	ENSMUSSNP540073	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32421461					SNP	C	T	T	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163322	NES11822872	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19294218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18499	CpG island 18499	844 bp proximal
Ppp1r37	protein phosphatase 1, regulatory subunit 37	within coordinates
Rr643186	regulatory region 643186	1469 bp distal
Rr643187	regulatory region 643187	1029 bp distal
Tssr70928	transcription start site region 70928	1829 bp downstream
Tssr70929	transcription start site region 70929	1875 bp downstream
Tssr70930	transcription start site region 70930	1908 bp downstream