rs32421555 SNP Detail

Summary

• ID
  rs32421555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:75598025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCCCATGA CTTTCGTTTT GTCTTAACTC TTACAGCAGC
  TACATTCTGT GAACAAGCAG AGGCTGCTTA AGTTCTCTCA GCGCTGCTTC CAGTAAGTGA
  Y
  CCATCCACGC ACACCTGAAG ACAAAGGTAC GAGAGCATGT CACTGATTTC TTGCTGTGTT
  TTTGAGAAGA GGGTGTTTCT TGATCTATCT TTCCAAATGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47164635	NES11243967	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32421555					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47164635	NES11243967	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:75598025 () rs orientation: forward

Symbol	Name	Function Class
Gm59526	predicted gene, 59526	within coordinates
Ppp2r5e	protein phosphatase 2, regulatory subunit B', epsilon	within coordinates
Rr467982	regulatory region 467982	1077 bp proximal
Tssr116681	transcription start site region 116681	1611 bp upstream
Tssr116682	transcription start site region 116682	1590 bp upstream
Tssr116683	transcription start site region 116683	1556 bp upstream