rs32421704 SNP Detail

Summary

• ID
  rs32421704
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19306780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAAAGTAGG AAATGGACAT
  CCTTCACCAG TTTAACATAA ACTGCTGGTA GCAGTTCGTA CAGGCCTCTA ATCTCGGCCC
  TTGGAAGGTG AAGGCGGGAT GTAAAGTTCA AAGTTACCCA GGGCCAGTTC AAGGCCAGCC
  TGGGGCTACT GTTCTGCCTG ATAATCTCAG GGGAAAACAA AACAAAACAA AACCCAGACA
  M
  CAAGAAGAAA GTTAAAGAGG AATGGGTCAG TTTGGAGACC ATTAGGTCTA CCTTGAGTTA
  CCAGGATGCG AAACTTGCTG GGCTTCCAGG CTAGCAGATA GGGCCAATTT CTCCATTCGC
  ATTGTAAAGT AACAGTCCGC AGTCCTCCCA CCTCCTATGC AAATTCGCTA AATGGGGCCA
  CACCTGAGCG TAAGCAGCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48163412	NES11821949	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	C	A	A	A	C	C	C	C	A
ss148479069	ENSMUSSNP4149895	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32421704					SNP	C	C	A	A	A	C	C	A	A	A	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163412	NES11821949	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19306780 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	128 bp proximal
Gemin7	gem nuclear organelle associated protein 7	within coordinates
Rr380485	regulatory region 380485	within coordinates
Rr643192	regulatory region 643192	1787 bp distal
Rr643193	regulatory region 643193	within coordinates
Rr643194	regulatory region 643194	103 bp proximal
Rr643195	regulatory region 643195	782 bp proximal
Tssr70933	transcription start site region 70933	502 bp downstream
Tssr70934	transcription start site region 70934	517 bp downstream
Tssr70935	transcription start site region 70935	524 bp downstream
Tssr70936	transcription start site region 70936	938 bp downstream