rs32421709 SNP Detail

Summary

• ID
  rs32421709
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19307849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCGGAGTG GGGGAAGGAA
  AGAAGAAAGA GTAGTGGCTC ACACCTGTAA TCTCAGATCT TGGCAGCCGG AGGCAGGAAG
  ATCGGGATCA ATTAGAGATA GAATAAGAGA GAGAAAGGGG TGGGGGACGA GGGAGGGACG
  CAGAAGGAGG AGGAGGGGAA AAAAGAAGCA GAAAAAGCAT AAGAGGTTTC CTATTAGCCG
  Y
  TTTGGAGGCA CACCTGTATT CCACCCCTCC CCGTCTCCGC CTCTAGGTAC CAGGAAAGGG
  GCTTACGGAA TGCTGCCGCT GGGATGTACC CAGCCCACTT TGCAACCTTT GTTTAAAAAT
  GGAAAAACTA AGCCGGGCGT GGTGGCGCAC GCCTTTAATC CCAGCACTCG GGAGGCAGAG
  GCAGGCGGAT TTCTGAGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48163420	NES11821856	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	C	T	C	T	T
ss148479114	ENSMUSSNP1751419	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32421709					SNP	T	C	C	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163420	NES11821856	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19307849 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	258 bp distal
Gemin7	gem nuclear organelle associated protein 7	581 bp upstream
Rr380485	regulatory region 380485	within coordinates
Rr643193	regulatory region 643193	967 bp distal
Rr643194	regulatory region 643194	within coordinates
Rr643195	regulatory region 643195	266 bp distal
Tssr70933	transcription start site region 70933	561 bp upstream
Tssr70934	transcription start site region 70934	547 bp upstream
Tssr70935	transcription start site region 70935	521 bp upstream
Tssr70936	transcription start site region 70936	79 bp upstream