rs32421711 SNP Detail

Summary

• ID
  rs32421711
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19307916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAGGCAGG AAGATCGGGA
  TCAATTAGAG ATAGAATAAG AGAGAGAAAG GGGTGGGGGA CGAGGGAGGG ACGCAGAAGG
  AGGAGGAGGG GAAAAAAGAA GCAGAAAAAG CATAAGAGGT TTCCTATTAG CCGCTTTGGA
  GGCACACCTG TATTCCACCC CTCCCCGTCT CCGCCTCTAG GTACCAGGAA AGGGGCTTAC
  S
  GAATGCTGCC GCTGGGATGT ACCCAGCCCA CTTTGCAACC TTTGTTTAAA AATGGAAAAA
  CTAAGCCGGG CGTGGTGGCG CACGCCTTTA ATCCCAGCAC TCGGGAGGCA GAGGCAGGCG
  GATTTCTGAG TTCGAGGCCA GCCTAATCTA CCAAGTGAGT TCCAGGGCAG CCAGGGCTAC
  GCAGAGAAAC CCTGTCTCGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48163422	NES11821857	PERLEGEN	MM_PANEL2	f	SNP		G	G	C	C	G	G	G	C	G	C	C
ss148479120	ENSMUSSNP2597268	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32421711					SNP	C	G	G	C	C	G	G	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163422	NES11821857	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19307916 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	325 bp distal
Gemin7	gem nuclear organelle associated protein 7	648 bp upstream
Rr380485	regulatory region 380485	within coordinates
Rr643193	regulatory region 643193	1034 bp distal
Rr643194	regulatory region 643194	within coordinates
Rr643195	regulatory region 643195	333 bp distal
Tssr70933	transcription start site region 70933	628 bp upstream
Tssr70934	transcription start site region 70934	614 bp upstream
Tssr70935	transcription start site region 70935	588 bp upstream
Tssr70936	transcription start site region 70936	146 bp upstream