rs32422496 SNP Detail

Summary

• ID
  rs32422496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19429237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAAAGTC AAAAGGCATG
  CAGCACAGGC AGGGGAGAAA GAATGGGGCT AAGGCCCCAT GACCCAGAGG GAGCAAAGAT
  CCAGCTAACT TCAGAGCAAG GGAGAAAGGC TGAGGTTCCA AAAGCCACGT AGAAACCGTA
  GAAACCGCCA ACCAAAGGCC CAGAGCAAAA GAAACCGCGG GAGGGTGAGA TAACAGAGGA
  Y
  CAGGAAAACA GGAAGCCAGA AAAGGAAGCC TAGAAGGGAA AAAGAGGAGA GACAAGGCAA
  GGAGAGGGTG TCAGATAAGA CTAGAGCGGA GGAGGAGAGA TAAGACAACC AGAAAAGTAA
  ACACCGCCTG GCGACCCTGG TCTCTTACAT GTTGATTGAT TCAAGGCATA GCTGTGCAGT
  GGGTGCTTGG GAAGTTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48163960	NES11834480	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32422496					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163960	NES11834480	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19429237 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	797 bp downstream
Cpgi18507	CpG island 18507	1209 bp proximal
Gm71725	predicted gene, 71725	1806 bp upstream
Rr155346	regulatory region 155346	764 bp proximal
Rr167193	regulatory region 167193	1636 bp distal
Rr167194	regulatory region 167194	1163 bp proximal
Tssr2112	transcription start site region 2112	1139 bp upstream
Tssr2113	transcription start site region 2113	1164 bp upstream
Tssr2114	transcription start site region 2114	1279 bp upstream
Tssr2115	transcription start site region 2115	1315 bp upstream
Tssr2116	transcription start site region 2116	1390 bp upstream
Tssr2117	transcription start site region 2117	1412 bp upstream
Tssr2118	transcription start site region 2118	1519 bp upstream
Tssr2119	transcription start site region 2119	1528 bp downstream
Tssr2120	transcription start site region 2120	1591 bp upstream
Tssr2121	transcription start site region 2121	1623 bp upstream
Tssr64880	transcription start site region 64880	956 bp upstream
Tssr64881	transcription start site region 64881	1008 bp upstream
Tssr64882	transcription start site region 64882	1052 bp upstream
Tssr64883	transcription start site region 64883	1090 bp upstream
Tssr64884	transcription start site region 64884	1117 bp upstream
Tssr64885	transcription start site region 64885	1196 bp upstream
Tssr64886	transcription start site region 64886	1217 bp upstream
Tssr64887	transcription start site region 64887	1249 bp upstream
Tssr64888	transcription start site region 64888	1468 bp upstream
Tssr64889	transcription start site region 64889	1562 bp upstream
Tssr64890	transcription start site region 64890	1608 bp upstream
Tssr64891	transcription start site region 64891	1631 bp upstream
Tssr64892	transcription start site region 64892	1664 bp upstream
Tssr64893	transcription start site region 64893	1699 bp upstream
Tssr70973	transcription start site region 70973	980 bp downstream
Tssr70974	transcription start site region 70974	1026 bp downstream
Tssr70975	transcription start site region 70975	1054 bp downstream
Tssr70976	transcription start site region 70976	1089 bp downstream
Tssr70977	transcription start site region 70977	1137 bp downstream
Tssr70978	transcription start site region 70978	1152 bp downstream
Tssr70979	transcription start site region 70979	1176 bp downstream
Tssr70980	transcription start site region 70980	1186 bp downstream
Tssr70981	transcription start site region 70981	1207 bp downstream
Tssr70982	transcription start site region 70982	1221 bp downstream
Tssr70983	transcription start site region 70983	1254 bp downstream
Tssr70984	transcription start site region 70984	1271 bp downstream
Tssr70985	transcription start site region 70985	1336 bp downstream
Tssr70986	transcription start site region 70986	1369 bp downstream
Tssr70987	transcription start site region 70987	1399 bp downstream
Tssr70988	transcription start site region 70988	1443 bp downstream
Tssr70989	transcription start site region 70989	1482 bp downstream
Tssr70990	transcription start site region 70990	1494 bp downstream
Tssr70991	transcription start site region 70991	1539 bp downstream
Tssr70992	transcription start site region 70992	1547 bp downstream
Tssr70993	transcription start site region 70993	1556 bp downstream
Tssr70994	transcription start site region 70994	1597 bp downstream
Tssr70995	transcription start site region 70995	1602 bp downstream
Tssr70996	transcription start site region 70996	1635 bp downstream
Tssr70997	transcription start site region 70997	1669 bp downstream
Tssr70998	transcription start site region 70998	1731 bp downstream
Tssr70999	transcription start site region 70999	1749 bp downstream