rs32422500 SNP Detail

Summary

• ID
  rs32422500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19429528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA CAAAGATTCA AATATTCAAG
  R
  CCAAACTAGG CTAGAGGGAG TGCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48163966	NES11834487	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	G	G	G	G	G		G	G	G	G		G
ss322117526	CHEV_7_20280952	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32422500					SNP	G	A	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163966	NES11834487	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19429528 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	506 bp downstream
Cpgi18507	CpG island 18507	918 bp proximal
Gm71725	predicted gene, 71725	1515 bp upstream
Rr155346	regulatory region 155346	473 bp proximal
Rr167193	regulatory region 167193	1927 bp distal
Rr167194	regulatory region 167194	872 bp proximal
Tssr2112	transcription start site region 2112	848 bp upstream
Tssr2113	transcription start site region 2113	873 bp upstream
Tssr2114	transcription start site region 2114	988 bp upstream
Tssr2115	transcription start site region 2115	1024 bp upstream
Tssr2116	transcription start site region 2116	1099 bp upstream
Tssr2117	transcription start site region 2117	1121 bp upstream
Tssr2118	transcription start site region 2118	1228 bp upstream
Tssr2119	transcription start site region 2119	1237 bp downstream
Tssr2120	transcription start site region 2120	1300 bp upstream
Tssr2121	transcription start site region 2121	1332 bp upstream
Tssr64880	transcription start site region 64880	665 bp upstream
Tssr64881	transcription start site region 64881	717 bp upstream
Tssr64882	transcription start site region 64882	761 bp upstream
Tssr64883	transcription start site region 64883	799 bp upstream
Tssr64884	transcription start site region 64884	826 bp upstream
Tssr64885	transcription start site region 64885	905 bp upstream
Tssr64886	transcription start site region 64886	926 bp upstream
Tssr64887	transcription start site region 64887	958 bp upstream
Tssr64888	transcription start site region 64888	1177 bp upstream
Tssr64889	transcription start site region 64889	1271 bp upstream
Tssr64890	transcription start site region 64890	1317 bp upstream
Tssr64891	transcription start site region 64891	1340 bp upstream
Tssr64892	transcription start site region 64892	1373 bp upstream
Tssr64893	transcription start site region 64893	1408 bp upstream
Tssr64894	transcription start site region 64894	1862 bp upstream
Tssr64895	transcription start site region 64895	1958 bp upstream
Tssr64896	transcription start site region 64896	1984 bp upstream
Tssr70973	transcription start site region 70973	689 bp downstream
Tssr70974	transcription start site region 70974	735 bp downstream
Tssr70975	transcription start site region 70975	763 bp downstream
Tssr70976	transcription start site region 70976	798 bp downstream
Tssr70977	transcription start site region 70977	846 bp downstream
Tssr70978	transcription start site region 70978	861 bp downstream
Tssr70979	transcription start site region 70979	885 bp downstream
Tssr70980	transcription start site region 70980	895 bp downstream
Tssr70981	transcription start site region 70981	916 bp downstream
Tssr70982	transcription start site region 70982	930 bp downstream
Tssr70983	transcription start site region 70983	963 bp downstream
Tssr70984	transcription start site region 70984	980 bp downstream
Tssr70985	transcription start site region 70985	1045 bp downstream
Tssr70986	transcription start site region 70986	1078 bp downstream
Tssr70987	transcription start site region 70987	1108 bp downstream
Tssr70988	transcription start site region 70988	1152 bp downstream
Tssr70989	transcription start site region 70989	1191 bp downstream
Tssr70990	transcription start site region 70990	1203 bp downstream
Tssr70991	transcription start site region 70991	1248 bp downstream
Tssr70992	transcription start site region 70992	1256 bp downstream
Tssr70993	transcription start site region 70993	1265 bp downstream
Tssr70994	transcription start site region 70994	1306 bp downstream
Tssr70995	transcription start site region 70995	1311 bp downstream
Tssr70996	transcription start site region 70996	1344 bp downstream
Tssr70997	transcription start site region 70997	1378 bp downstream
Tssr70998	transcription start site region 70998	1440 bp downstream
Tssr70999	transcription start site region 70999	1458 bp downstream
Tssr71000	transcription start site region 71000	1901 bp downstream
Tssr71001	transcription start site region 71001	1931 bp downstream
Tssr71002	transcription start site region 71002	1991 bp downstream