rs32422502 SNP Detail

Summary

• ID
  rs32422502
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19430251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCA GAGGGCCAGA GAGGTGCTTG
  R
  GACAGGGCCA CCTGGCTGGA TATGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48163968	NES11834425	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	G	A	A	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32422502					SNP	G	A	A	A	G	G	A	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163968	NES11834425	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19430251 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	within coordinates
Cpgi18507	CpG island 18507	195 bp proximal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57	1445 bp proximal
Gm71725	predicted gene, 71725	792 bp upstream
Rr155346	regulatory region 155346	within coordinates
Rr167194	regulatory region 167194	149 bp proximal
Tssr2112	transcription start site region 2112	125 bp upstream
Tssr2113	transcription start site region 2113	150 bp upstream
Tssr2114	transcription start site region 2114	265 bp upstream
Tssr2115	transcription start site region 2115	301 bp upstream
Tssr2116	transcription start site region 2116	376 bp upstream
Tssr2117	transcription start site region 2117	398 bp upstream
Tssr2118	transcription start site region 2118	505 bp upstream
Tssr2119	transcription start site region 2119	514 bp downstream
Tssr2120	transcription start site region 2120	577 bp upstream
Tssr2121	transcription start site region 2121	609 bp upstream
Tssr2122	transcription start site region 2122	1329 bp downstream
Tssr64880	transcription start site region 64880	52 bp downstream
Tssr64881	transcription start site region 64881	within coordinates
Tssr64882	transcription start site region 64882	38 bp upstream
Tssr64883	transcription start site region 64883	76 bp upstream
Tssr64884	transcription start site region 64884	103 bp upstream
Tssr64885	transcription start site region 64885	182 bp upstream
Tssr64886	transcription start site region 64886	203 bp upstream
Tssr64887	transcription start site region 64887	235 bp upstream
Tssr64888	transcription start site region 64888	454 bp upstream
Tssr64889	transcription start site region 64889	548 bp upstream
Tssr64890	transcription start site region 64890	594 bp upstream
Tssr64891	transcription start site region 64891	617 bp upstream
Tssr64892	transcription start site region 64892	650 bp upstream
Tssr64893	transcription start site region 64893	685 bp upstream
Tssr64894	transcription start site region 64894	1139 bp upstream
Tssr64895	transcription start site region 64895	1235 bp upstream
Tssr64896	transcription start site region 64896	1261 bp upstream
Tssr70973	transcription start site region 70973	within coordinates
Tssr70974	transcription start site region 70974	12 bp downstream
Tssr70975	transcription start site region 70975	40 bp downstream
Tssr70976	transcription start site region 70976	75 bp downstream
Tssr70977	transcription start site region 70977	123 bp downstream
Tssr70978	transcription start site region 70978	138 bp downstream
Tssr70979	transcription start site region 70979	162 bp downstream
Tssr70980	transcription start site region 70980	172 bp downstream
Tssr70981	transcription start site region 70981	193 bp downstream
Tssr70982	transcription start site region 70982	207 bp downstream
Tssr70983	transcription start site region 70983	240 bp downstream
Tssr70984	transcription start site region 70984	257 bp downstream
Tssr70985	transcription start site region 70985	322 bp downstream
Tssr70986	transcription start site region 70986	355 bp downstream
Tssr70987	transcription start site region 70987	385 bp downstream
Tssr70988	transcription start site region 70988	429 bp downstream
Tssr70989	transcription start site region 70989	468 bp downstream
Tssr70990	transcription start site region 70990	480 bp downstream
Tssr70991	transcription start site region 70991	525 bp downstream
Tssr70992	transcription start site region 70992	533 bp downstream
Tssr70993	transcription start site region 70993	542 bp downstream
Tssr70994	transcription start site region 70994	583 bp downstream
Tssr70995	transcription start site region 70995	588 bp downstream
Tssr70996	transcription start site region 70996	621 bp downstream
Tssr70997	transcription start site region 70997	655 bp downstream
Tssr70998	transcription start site region 70998	717 bp downstream
Tssr70999	transcription start site region 70999	735 bp downstream
Tssr71000	transcription start site region 71000	1178 bp downstream
Tssr71001	transcription start site region 71001	1208 bp downstream
Tssr71002	transcription start site region 71002	1268 bp downstream
Tssr71003	transcription start site region 71003	1286 bp downstream
Tssr71004	transcription start site region 71004	1314 bp downstream
Tssr71005	transcription start site region 71005	1665 bp downstream
Tssr71006	transcription start site region 71006	1698 bp downstream
Tssr71007	transcription start site region 71007	1756 bp downstream
Tssr71008	transcription start site region 71008	1862 bp downstream
Tssr71009	transcription start site region 71009	1880 bp downstream