rs32422596 SNP Detail

Summary

• ID
  rs32422596
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4526346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAT GTTTTGGAGG TGCATTCACC
  S
  AGGACGTTGC CATAGCTTCC TGGAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46143840	mCV22879959	ABI	CRAMUS_MOUSE	f	SNP	C	C	G					C		G
ss60964942	NES16164651	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	C	G		C	G	G	G		C	G	G	C		C
ss148179444	ENSMUSSNP4050502	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G							G
ss322094965	CHEV_7_4474949	CHEVERUD	SCREENING_POP	f	SNP													C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32422596					SNP	C	C	G	G	G	C	G	C	C	G	G	G	C	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60964942	NES16164651	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4526346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	1427 bp distal
Dnaaf3	dynein, axonemal assembly factor 3	within coordinates
Rr641975	regulatory region 641975	1897 bp distal
Rr641976	regulatory region 641976	329 bp distal
Rr641977	regulatory region 641977	1053 bp proximal
Tnni3	troponin I, cardiac 3	118 bp upstream
Tssr64336	transcription start site region 64336	1671 bp downstream
Tssr64337	transcription start site region 64337	1502 bp downstream
Tssr70484	transcription start site region 70484	1444 bp upstream
Tssr70485	transcription start site region 70485	898 bp upstream
Tssr70486	transcription start site region 70486	535 bp upstream
Tssr70487	transcription start site region 70487	518 bp upstream
Tssr70488	transcription start site region 70488	990 bp downstream