rs32423024 SNP Detail

Summary

• ID
  rs32423024
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:13442983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTG AGGCCCAACG TCACTCCCGG
  M
  GAGTAAGGGG CTCGGGTCCC CGATT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
ss45145806	mCV25326693	ABI	CRAMUS_MOUSE	f	SNP	C	A
ss319643088	CHEV_1_13362840	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
rs32423024					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13442983 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi41	CpG island 41			within coordinates
Gm29570	predicted gene 29570			within coordinates
Gm70663	predicted gene, 70663			1469 bp downstream
Ncoa2	nuclear receptor coactivator 2			Intron
				mRNA-UTR
Rr395968	regulatory region 395968			51 bp downstream
Rr407893	regulatory region 407893			331 bp distal
Rr407894	regulatory region 407894			250 bp distal
Rr407895	regulatory region 407895			within coordinates
Rr407896	regulatory region 407896			913 bp proximal
Rr407897	regulatory region 407897			1314 bp proximal
Rr407898	regulatory region 407898			1500 bp proximal
Rr407899	regulatory region 407899			1948 bp proximal
Tssr5965	transcription start site region 5965			157 bp upstream
Tssr10989	transcription start site region 10989			302 bp upstream
Tssr10990	transcription start site region 10990			883 bp downstream
Tssr10991	transcription start site region 10991			1120 bp downstream
Tssr10992	transcription start site region 10992			1268 bp downstream
Tssr10993	transcription start site region 10993			1313 bp downstream
Tssr10994	transcription start site region 10994			1362 bp downstream
Tssr10995	transcription start site region 10995			1461 bp downstream
Tssr10996	transcription start site region 10996			1637 bp downstream
Tssr10997	transcription start site region 10997			1673 bp downstream