rs32423370 SNP Detail

Summary

• ID
  rs32423370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19432664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCTAAGTC CTGCTTTCCA
  TTTTGTGTTA ATTTAACACG ATTTTTAATC GTCCTCCATC CCTGCGAAGT GGTACCCTCC
  CACAACTACA GAACTTAGGG AGCTCAGCCA TGAGGAGCCA CAGTTTGAAA CCAGTCCGGG
  TTACTTGGGG ACTGTGATGG AAATCAGTAG GTATTTATAT AAAAGCAGCC TAAGGCTCAT
  Y
  CCGAGTTTTT TCGCCATAGG ATGGTTCCTA GTTGAGCCGG TACGCCGTGC ACCGACAGTC
  CCGTACTCCT TCCTGGAGGT AACCCCTCCA CCTGCTCTGA CTCTGGCAAA GGCTAGTTAC
  CTCGAGTCCT TAGTTTGTCC CCCAAGACTT CTATCGTGCT GCCTGCTTTT CCAATTCTTG
  TGCCTGTTTC CTGGACTCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48163980	NES11834316	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	T	C	C	C	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32423370					SNP	T	C	C	C	T	T	C	C	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163980	NES11834316	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19432664 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	within coordinates
Cpgi18507	CpG island 18507	1661 bp distal
Cpgi18508	CpG island 18508	within coordinates
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57	820 bp distal
Gm71725	predicted gene, 71725	within coordinates
Rr155347	regulatory region 155347	937 bp proximal
Rr167194	regulatory region 167194	within coordinates
Tssr2117	transcription start site region 2117	1970 bp downstream
Tssr2118	transcription start site region 2118	1875 bp downstream
Tssr2119	transcription start site region 2119	1898 bp upstream
Tssr2120	transcription start site region 2120	1825 bp downstream
Tssr2121	transcription start site region 2121	1799 bp downstream
Tssr2122	transcription start site region 2122	1074 bp upstream
Tssr64888	transcription start site region 64888	1949 bp downstream
Tssr64889	transcription start site region 64889	1842 bp downstream
Tssr64890	transcription start site region 64890	1808 bp downstream
Tssr64891	transcription start site region 64891	1780 bp downstream
Tssr64892	transcription start site region 64892	1749 bp downstream
Tssr64893	transcription start site region 64893	1655 bp downstream
Tssr64894	transcription start site region 64894	1241 bp downstream
Tssr64895	transcription start site region 64895	1162 bp downstream
Tssr64896	transcription start site region 64896	1138 bp downstream
Tssr70987	transcription start site region 70987	1991 bp upstream
Tssr70988	transcription start site region 70988	1972 bp upstream
Tssr70989	transcription start site region 70989	1934 bp upstream
Tssr70990	transcription start site region 70990	1915 bp upstream
Tssr70991	transcription start site region 70991	1885 bp upstream
Tssr70992	transcription start site region 70992	1873 bp upstream
Tssr70993	transcription start site region 70993	1844 bp upstream
Tssr70994	transcription start site region 70994	1829 bp upstream
Tssr70995	transcription start site region 70995	1796 bp upstream
Tssr70996	transcription start site region 70996	1770 bp upstream
Tssr70997	transcription start site region 70997	1704 bp upstream
Tssr70998	transcription start site region 70998	1684 bp upstream
Tssr70999	transcription start site region 70999	1628 bp upstream
Tssr71000	transcription start site region 71000	1217 bp upstream
Tssr71001	transcription start site region 71001	1151 bp upstream
Tssr71002	transcription start site region 71002	1132 bp upstream
Tssr71003	transcription start site region 71003	1104 bp upstream
Tssr71004	transcription start site region 71004	1086 bp upstream
Tssr71005	transcription start site region 71005	741 bp upstream
Tssr71006	transcription start site region 71006	708 bp upstream
Tssr71007	transcription start site region 71007	646 bp upstream
Tssr71008	transcription start site region 71008	540 bp upstream
Tssr71009	transcription start site region 71009	478 bp upstream
Tssr71010	transcription start site region 71010	358 bp upstream
Tssr71011	transcription start site region 71011	334 bp upstream
Tssr71012	transcription start site region 71012	304 bp upstream
Tssr71013	transcription start site region 71013	306 bp downstream
Tssr71014	transcription start site region 71014	855 bp downstream
Tssr71015	transcription start site region 71015	980 bp downstream
Tssr71016	transcription start site region 71016	1216 bp downstream
Tssr71017	transcription start site region 71017	1665 bp downstream
Tssr71018	transcription start site region 71018	1706 bp downstream