rs32423372 SNP Detail

Summary

• ID
  rs32423372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19432690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAATTTAA CACGATTTTT
  AATCGTCCTC CATCCCTGCG AAGTGGTACC CTCCCACAAC TACAGAACTT AGGGAGCTCA
  GCCATGAGGA GCCACAGTTT GAAACCAGTC CGGGTTACTT GGGGACTGTG ATGGAAATCA
  GTAGGTATTT ATATAAAAGC AGCCTAAGGC TCATCCCGAG TTTTTTCGCC ATAGGATGGT
  Y
  CCTAGTTGAG CCGGTACGCC GTGCACCGAC AGTCCCGTAC TCCTTCCTGG AGGTAACCCC
  TCCACCTGCT CTGACTCTGG CAAAGGCTAG TTACCTCGAG TCCTTAGTTT GTCCCCCAAG
  ACTTCTATCG TGCTGCCTGC TTTTCCAATT CTTGTGCCTG TTTCCTGGAC TCCGGGGGAT
  CTCAAGGTTC CCAGCCCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48163982	NES11834317	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	C	C	T	T	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32423372					SNP	C	T	T	T	C	C	C	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163982	NES11834317	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19432690 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	within coordinates
Cpgi18507	CpG island 18507	1687 bp distal
Cpgi18508	CpG island 18508	within coordinates
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57	846 bp distal
Gm71725	predicted gene, 71725	within coordinates
Rr155347	regulatory region 155347	911 bp proximal
Rr167194	regulatory region 167194	within coordinates
Tssr2117	transcription start site region 2117	1996 bp downstream
Tssr2118	transcription start site region 2118	1901 bp downstream
Tssr2119	transcription start site region 2119	1924 bp upstream
Tssr2120	transcription start site region 2120	1851 bp downstream
Tssr2121	transcription start site region 2121	1825 bp downstream
Tssr2122	transcription start site region 2122	1100 bp upstream
Tssr64888	transcription start site region 64888	1975 bp downstream
Tssr64889	transcription start site region 64889	1868 bp downstream
Tssr64890	transcription start site region 64890	1834 bp downstream
Tssr64891	transcription start site region 64891	1806 bp downstream
Tssr64892	transcription start site region 64892	1775 bp downstream
Tssr64893	transcription start site region 64893	1681 bp downstream
Tssr64894	transcription start site region 64894	1267 bp downstream
Tssr64895	transcription start site region 64895	1188 bp downstream
Tssr64896	transcription start site region 64896	1164 bp downstream
Tssr70988	transcription start site region 70988	1998 bp upstream
Tssr70989	transcription start site region 70989	1960 bp upstream
Tssr70990	transcription start site region 70990	1941 bp upstream
Tssr70991	transcription start site region 70991	1911 bp upstream
Tssr70992	transcription start site region 70992	1899 bp upstream
Tssr70993	transcription start site region 70993	1870 bp upstream
Tssr70994	transcription start site region 70994	1855 bp upstream
Tssr70995	transcription start site region 70995	1822 bp upstream
Tssr70996	transcription start site region 70996	1796 bp upstream
Tssr70997	transcription start site region 70997	1730 bp upstream
Tssr70998	transcription start site region 70998	1710 bp upstream
Tssr70999	transcription start site region 70999	1654 bp upstream
Tssr71000	transcription start site region 71000	1243 bp upstream
Tssr71001	transcription start site region 71001	1177 bp upstream
Tssr71002	transcription start site region 71002	1158 bp upstream
Tssr71003	transcription start site region 71003	1130 bp upstream
Tssr71004	transcription start site region 71004	1112 bp upstream
Tssr71005	transcription start site region 71005	767 bp upstream
Tssr71006	transcription start site region 71006	734 bp upstream
Tssr71007	transcription start site region 71007	672 bp upstream
Tssr71008	transcription start site region 71008	566 bp upstream
Tssr71009	transcription start site region 71009	504 bp upstream
Tssr71010	transcription start site region 71010	384 bp upstream
Tssr71011	transcription start site region 71011	360 bp upstream
Tssr71012	transcription start site region 71012	330 bp upstream
Tssr71013	transcription start site region 71013	280 bp downstream
Tssr71014	transcription start site region 71014	829 bp downstream
Tssr71015	transcription start site region 71015	954 bp downstream
Tssr71016	transcription start site region 71016	1190 bp downstream
Tssr71017	transcription start site region 71017	1639 bp downstream
Tssr71018	transcription start site region 71018	1680 bp downstream