rs32424169 SNP Detail

Summary

• ID
  rs32424169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131804093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTTGTGC TGGTTAACTG
  AAATGGAAAC TACAAATGCA ATTATTCAAT CATGGATCCA GTATTATTTT TTTAATTGCT
  ATCACATGTA TCCAGTCATG CATGCCAGAG AGAGCAGACT ATGAATTCTT TAATTTGGCC
  TCAGTAAACA AGGGCTCCCG GGCCAACTGC CTCCTTTCCC GGGACTCAAT CTAAGGGCTG
  Y
  CAATAGGAAA ACCCCAGCCC CGGGTTGGAC AGAGTTATTC TAAAGGGCTG AAGAGGCCCC
  ACCTCTCAGC TCTCCGGCAT GAGGCTCCAG CTCTGTTGGG TTTTTGCTGC TAGTGGGTGA
  CTCAGCAACG CCGGCGCCTG GCCCTGCCTG ATAAGCCTGT GTGCCTATGT GTGAGTTTGT
  ACTTGGGAAT ACATCTGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45645961	mCV24921312	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss147472921	ENSMUSSNP2259353	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C	C		C
ss321330384	CHEV_4_131632697	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs32424169					SNP	T	T	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131804093 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14949	CpG island 14949	1218 bp distal
Epb41	erythrocyte membrane protein band 4.1	1461 bp upstream
Gm10300	predicted gene 10300	within coordinates
Rr1070	regulatory region 1070	within coordinates
Rr600865	regulatory region 600865	1501 bp distal
Rr600866	regulatory region 600866	971 bp distal
Rr600867	regulatory region 600867	30 bp proximal
Tssr39361	transcription start site region 39361	1173 bp downstream
Tssr43633	transcription start site region 43633	1491 bp upstream
Tssr43634	transcription start site region 43634	1444 bp upstream
Tssr43635	transcription start site region 43635	1352 bp upstream
Tssr43636	transcription start site region 43636	1714 bp downstream