rs32424374 SNP Detail

Summary

• ID
  rs32424374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19432707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATCGTC CTCCATCCCT
  GCGAAGTGGT ACCCTCCCAC AACTACAGAA CTTAGGGAGC TCAGCCATGA GGAGCCACAG
  TTTGAAACCA GTCCGGGTTA CTTGGGGACT GTGATGGAAA TCAGTAGGTA TTTATATAAA
  AGCAGCCTAA GGCTCATCCC GAGTTTTTTC GCCATAGGAT GGTTCCTAGT TGAGCCGGTA
  Y
  GCCGTGCACC GACAGTCCCG TACTCCTTCC TGGAGGTAAC CCCTCCACCT GCTCTGACTC
  TGGCAAAGGC TAGTTACCTC GAGTCCTTAG TTTGTCCCCC AAGACTTCTA TCGTGCTGCC
  TGCTTTTCCA ATTCTTGTGC CTGTTTCCTG GACTCCGGGG GATCTCAAGG TTCCCAGCCC
  ACATCCTACC AAGGTCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48163984	NES11834318	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	T	T	C	C	C	T	T	T	T	C
ss148481714	ENSMUSSNP4566457	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32424374					SNP	T	T	C	C	C	T	T	T	C	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163984	NES11834318	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19432707 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	within coordinates
Cpgi18507	CpG island 18507	1704 bp distal
Cpgi18508	CpG island 18508	within coordinates
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57	863 bp distal
Gm71725	predicted gene, 71725	within coordinates
Rr155347	regulatory region 155347	894 bp proximal
Rr167194	regulatory region 167194	within coordinates
Tssr2118	transcription start site region 2118	1918 bp downstream
Tssr2119	transcription start site region 2119	1941 bp upstream
Tssr2120	transcription start site region 2120	1868 bp downstream
Tssr2121	transcription start site region 2121	1842 bp downstream
Tssr2122	transcription start site region 2122	1117 bp upstream
Tssr64888	transcription start site region 64888	1992 bp downstream
Tssr64889	transcription start site region 64889	1885 bp downstream
Tssr64890	transcription start site region 64890	1851 bp downstream
Tssr64891	transcription start site region 64891	1823 bp downstream
Tssr64892	transcription start site region 64892	1792 bp downstream
Tssr64893	transcription start site region 64893	1698 bp downstream
Tssr64894	transcription start site region 64894	1284 bp downstream
Tssr64895	transcription start site region 64895	1205 bp downstream
Tssr64896	transcription start site region 64896	1181 bp downstream
Tssr70989	transcription start site region 70989	1977 bp upstream
Tssr70990	transcription start site region 70990	1958 bp upstream
Tssr70991	transcription start site region 70991	1928 bp upstream
Tssr70992	transcription start site region 70992	1916 bp upstream
Tssr70993	transcription start site region 70993	1887 bp upstream
Tssr70994	transcription start site region 70994	1872 bp upstream
Tssr70995	transcription start site region 70995	1839 bp upstream
Tssr70996	transcription start site region 70996	1813 bp upstream
Tssr70997	transcription start site region 70997	1747 bp upstream
Tssr70998	transcription start site region 70998	1727 bp upstream
Tssr70999	transcription start site region 70999	1671 bp upstream
Tssr71000	transcription start site region 71000	1260 bp upstream
Tssr71001	transcription start site region 71001	1194 bp upstream
Tssr71002	transcription start site region 71002	1175 bp upstream
Tssr71003	transcription start site region 71003	1147 bp upstream
Tssr71004	transcription start site region 71004	1129 bp upstream
Tssr71005	transcription start site region 71005	784 bp upstream
Tssr71006	transcription start site region 71006	751 bp upstream
Tssr71007	transcription start site region 71007	689 bp upstream
Tssr71008	transcription start site region 71008	583 bp upstream
Tssr71009	transcription start site region 71009	521 bp upstream
Tssr71010	transcription start site region 71010	401 bp upstream
Tssr71011	transcription start site region 71011	377 bp upstream
Tssr71012	transcription start site region 71012	347 bp upstream
Tssr71013	transcription start site region 71013	263 bp downstream
Tssr71014	transcription start site region 71014	812 bp downstream
Tssr71015	transcription start site region 71015	937 bp downstream
Tssr71016	transcription start site region 71016	1173 bp downstream
Tssr71017	transcription start site region 71017	1622 bp downstream
Tssr71018	transcription start site region 71018	1663 bp downstream