rs32424376 SNP Detail

Summary

• ID
  rs32424376
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19432772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTCGCCAT AGGATGGTTC CTAGTTGAGC CGGTACGCCG
  TGCACCGACA GTCCCGTACT CCTTCCTGGA GGTAACCCCT CCACCTGCTC TGACTCTGGC
  M
  AAGGCTAGTT ACCTCGAGTC CTTAGTTTGT CCCCCAAGAC TTCTATCGTG CTGCCTGCTT
  TTCCAATTCT TGTGCCTGTT TCCTGGACTC CGGGGGATCT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48163986	NES11834319	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32424376					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163986	NES11834319	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19432772 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Apoe	apolipoprotein E			Intron
				Noncoding-Transcript-Variant
Cpgi18507	CpG island 18507			1769 bp distal
Cpgi18508	CpG island 18508			46 bp distal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57			928 bp distal
Gm71725	predicted gene, 71725			within coordinates
Rr643241	regulatory region 643241			1711 bp distal
Rr643242	regulatory region 643242			within coordinates
Rr643243	regulatory region 643243			551 bp distal
Rr643244	regulatory region 643244			151 bp proximal
Rr643245	regulatory region 643245			1483 bp proximal
Tssr2118	transcription start site region 2118			1983 bp downstream
Tssr2120	transcription start site region 2120			1933 bp downstream
Tssr2121	transcription start site region 2121			1907 bp downstream
Tssr2122	transcription start site region 2122			1182 bp upstream
Tssr64889	transcription start site region 64889			1950 bp downstream
Tssr64890	transcription start site region 64890			1916 bp downstream
Tssr64891	transcription start site region 64891			1888 bp downstream
Tssr64892	transcription start site region 64892			1857 bp downstream
Tssr64893	transcription start site region 64893			1763 bp downstream
Tssr64894	transcription start site region 64894			1349 bp downstream
Tssr64895	transcription start site region 64895			1270 bp downstream
Tssr64896	transcription start site region 64896			1246 bp downstream
Tssr70991	transcription start site region 70991			1993 bp upstream
Tssr70992	transcription start site region 70992			1981 bp upstream
Tssr70993	transcription start site region 70993			1952 bp upstream
Tssr70994	transcription start site region 70994			1937 bp upstream
Tssr70995	transcription start site region 70995			1904 bp upstream
Tssr70996	transcription start site region 70996			1878 bp upstream
Tssr70997	transcription start site region 70997			1812 bp upstream
Tssr70998	transcription start site region 70998			1792 bp upstream
Tssr70999	transcription start site region 70999			1736 bp upstream
Tssr71000	transcription start site region 71000			1325 bp upstream
Tssr71001	transcription start site region 71001			1259 bp upstream
Tssr71002	transcription start site region 71002			1240 bp upstream
Tssr71003	transcription start site region 71003			1212 bp upstream
Tssr71004	transcription start site region 71004			1194 bp upstream
Tssr71005	transcription start site region 71005			849 bp upstream
Tssr71006	transcription start site region 71006			816 bp upstream
Tssr71007	transcription start site region 71007			754 bp upstream
Tssr71008	transcription start site region 71008			648 bp upstream
Tssr71009	transcription start site region 71009			586 bp upstream
Tssr71010	transcription start site region 71010			466 bp upstream
Tssr71011	transcription start site region 71011			442 bp upstream
Tssr71012	transcription start site region 71012			412 bp upstream
Tssr71013	transcription start site region 71013			198 bp downstream
Tssr71014	transcription start site region 71014			747 bp downstream
Tssr71015	transcription start site region 71015			872 bp downstream
Tssr71016	transcription start site region 71016			1108 bp downstream
Tssr71017	transcription start site region 71017			1557 bp downstream
Tssr71018	transcription start site region 71018			1598 bp downstream