rs32424378 SNP Detail

Summary

• ID
  rs32424378
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19432789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAACCAGT CCGGGTTACT
  TGGGGACTGT GATGGAAATC AGTAGGTATT TATATAAAAG CAGCCTAAGG CTCATCCCGA
  GTTTTTTCGC CATAGGATGG TTCCTAGTTG AGCCGGTACG CCGTGCACCG ACAGTCCCGT
  ACTCCTTCCT GGAGGTAACC CCTCCACCTG CTCTGACTCT GGCAAAGGCT AGTTACCTCG
  M
  GTCCTTAGTT TGTCCCCCAA GACTTCTATC GTGCTGCCTG CTTTTCCAAT TCTTGTGCCT
  GTTTCCTGGA CTCCGGGGGA TCTCAAGGTT CCCAGCCCAC ATCCTACCAA GGTCCCTGGG
  TGAATCCCCA GCCCAGCTTG TCTTACCAGC TCCTTCCGAA ACAAGTCCTT AGCCTCCAGG
  GTCTGAGCAG GGGATCGGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48163988	NES11834320	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	C	C	C	A	A	A	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32424378					SNP	C	A	A	A	C	C	C	A	A	A	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163988	NES11834320	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19432789 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Apoe	apolipoprotein E			Intron
				Noncoding-Transcript-Variant
Cpgi18507	CpG island 18507			1786 bp distal
Cpgi18508	CpG island 18508			63 bp distal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57			945 bp distal
Gm71725	predicted gene, 71725			within coordinates
Rr643241	regulatory region 643241			1728 bp distal
Rr643242	regulatory region 643242			within coordinates
Rr643243	regulatory region 643243			568 bp distal
Rr643244	regulatory region 643244			134 bp proximal
Rr643245	regulatory region 643245			1466 bp proximal
Tssr2118	transcription start site region 2118			2000 bp downstream
Tssr2120	transcription start site region 2120			1950 bp downstream
Tssr2121	transcription start site region 2121			1924 bp downstream
Tssr2122	transcription start site region 2122			1199 bp upstream
Tssr64889	transcription start site region 64889			1967 bp downstream
Tssr64890	transcription start site region 64890			1933 bp downstream
Tssr64891	transcription start site region 64891			1905 bp downstream
Tssr64892	transcription start site region 64892			1874 bp downstream
Tssr64893	transcription start site region 64893			1780 bp downstream
Tssr64894	transcription start site region 64894			1366 bp downstream
Tssr64895	transcription start site region 64895			1287 bp downstream
Tssr64896	transcription start site region 64896			1263 bp downstream
Tssr70992	transcription start site region 70992			1998 bp upstream
Tssr70993	transcription start site region 70993			1969 bp upstream
Tssr70994	transcription start site region 70994			1954 bp upstream
Tssr70995	transcription start site region 70995			1921 bp upstream
Tssr70996	transcription start site region 70996			1895 bp upstream
Tssr70997	transcription start site region 70997			1829 bp upstream
Tssr70998	transcription start site region 70998			1809 bp upstream
Tssr70999	transcription start site region 70999			1753 bp upstream
Tssr71000	transcription start site region 71000			1342 bp upstream
Tssr71001	transcription start site region 71001			1276 bp upstream
Tssr71002	transcription start site region 71002			1257 bp upstream
Tssr71003	transcription start site region 71003			1229 bp upstream
Tssr71004	transcription start site region 71004			1211 bp upstream
Tssr71005	transcription start site region 71005			866 bp upstream
Tssr71006	transcription start site region 71006			833 bp upstream
Tssr71007	transcription start site region 71007			771 bp upstream
Tssr71008	transcription start site region 71008			665 bp upstream
Tssr71009	transcription start site region 71009			603 bp upstream
Tssr71010	transcription start site region 71010			483 bp upstream
Tssr71011	transcription start site region 71011			459 bp upstream
Tssr71012	transcription start site region 71012			429 bp upstream
Tssr71013	transcription start site region 71013			181 bp downstream
Tssr71014	transcription start site region 71014			730 bp downstream
Tssr71015	transcription start site region 71015			855 bp downstream
Tssr71016	transcription start site region 71016			1091 bp downstream
Tssr71017	transcription start site region 71017			1540 bp downstream
Tssr71018	transcription start site region 71018			1581 bp downstream