rs32424380 SNP Detail

Summary

• ID
  rs32424380
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19433218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTCCCGC CCCCTCCTCA
  GGGCTAGGGC GGGCTGTGCC AGCCCCCTGT CACGAGGCGG GTTGTTCTCT CCCCCTTCAC
  AGCAGGGCAG AGGAAAGAGG TGGAGTTTGG ATGCCTTGTG ACCCCCCGCT CCCCTCCCCC
  GCCAACAAAG GGAGCGGACA CCTCATTGAA TAATCCAGGC CTTGGTACTG GGGCACTGAG
  W
  ACCGCTCCTT CCCTTTCCCC GCGGGGTCTG GTGCATTGTA AAGAAAAGAG CTGGCAGCCT
  AAATGGAAAT GGGTGGGTGG GGGCTAAGAG GCTCAGCTTC TGGGGTGAAG ATCGTTGTTC
  TGGGATCCCT CGTTGTTGAT TCCTCCACCA CAGGTGAACT CTTTCCATTC CAAGGCTGGG
  ACGTGCTCCA GTTCCTTCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48163990	NES11834321	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	T	T	A	A	A	A	T	T	T	T	A
ss148481720	ENSMUSSNP481734	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32424380					SNP	T	T	A	A	A	T	T	A	A	A	A	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163990	NES11834321	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19433218 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	mRNA-UTR
Cpgi18508	CpG island 18508	492 bp distal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57	1374 bp distal
Gm71725	predicted gene, 71725	within coordinates
Rr643242	regulatory region 643242	396 bp distal
Rr643243	regulatory region 643243	997 bp distal
Rr643244	regulatory region 643244	within coordinates
Rr643245	regulatory region 643245	1037 bp proximal
Rr643246	regulatory region 643246	1963 bp proximal
Tssr2122	transcription start site region 2122	1628 bp upstream
Tssr64894	transcription start site region 64894	1795 bp downstream
Tssr64895	transcription start site region 64895	1716 bp downstream
Tssr64896	transcription start site region 64896	1692 bp downstream
Tssr71000	transcription start site region 71000	1771 bp upstream
Tssr71001	transcription start site region 71001	1705 bp upstream
Tssr71002	transcription start site region 71002	1686 bp upstream
Tssr71003	transcription start site region 71003	1658 bp upstream
Tssr71004	transcription start site region 71004	1640 bp upstream
Tssr71005	transcription start site region 71005	1295 bp upstream
Tssr71006	transcription start site region 71006	1262 bp upstream
Tssr71007	transcription start site region 71007	1200 bp upstream
Tssr71008	transcription start site region 71008	1094 bp upstream
Tssr71009	transcription start site region 71009	1032 bp upstream
Tssr71010	transcription start site region 71010	912 bp upstream
Tssr71011	transcription start site region 71011	888 bp upstream
Tssr71012	transcription start site region 71012	858 bp upstream
Tssr71013	transcription start site region 71013	230 bp upstream
Tssr71014	transcription start site region 71014	301 bp downstream
Tssr71015	transcription start site region 71015	426 bp downstream
Tssr71016	transcription start site region 71016	662 bp downstream
Tssr71017	transcription start site region 71017	1111 bp downstream
Tssr71018	transcription start site region 71018	1152 bp downstream