rs32424745 SNP Detail

Summary

• ID
  rs32424745
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:128065013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTAATTT TTTTTTTAAA
  AAAGGAAAGG AAAGAACTTC AGAGAGCTTC AGAAATCTAC ACAAGTGAAA CAAAGGGGTC
  AGAAAAAAAA ATAGGGAAGG GAAGAGGTGG GGAAGGCACC AAGCTCAGCC TCAGCCATAC
  AGTTCCCATC CACTTCCAAA AGGTAAGCCA AATGAAACGC AGGCAGTCCT ATACCCAGAA
  Y
  AAGCCCACAA CCCTTGTAAG CCTTAAATCC AGGTTTGACG CAGCAGTAAT TGCCCCAGCA
  GAAAAATTCA ACAGCAGAGA GAATCTTATC TTGTCACACT GTATGACTCA GAGGCCAGTA
  GCCAGAAGCA ATCTGAAGGG AGAATCTATT TTTAAAAACA GCTACCTGGG GACCTGAAAC
  CAGGGAGCGC CCACAGAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46144020	mCV24293547	ABI	CRAMUS_MOUSE	f	SNP	T	C					C		C
ss61060893	NES16065788	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	T	C		C	C	C	T	C	C	C	C
ss145891508	ENSMUSSNP6799440	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C							C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32424745					SNP	T	C	C	C	T	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61060893	NES16065788	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128065013 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19791	CpG island 19791	1051 bp distal
Gm32816	predicted gene, 32816	within coordinates
Rr368466	regulatory region 368466	1352 bp downstream
Rr656042	regulatory region 656042	1200 bp distal
Rr656043	regulatory region 656043	428 bp distal
Rr656044	regulatory region 656044	942 bp distal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1	1572 bp upstream
Tssr69425	transcription start site region 69425	1315 bp downstream
Tssr75111	transcription start site region 75111	1963 bp upstream
Tssr75112	transcription start site region 75112	1902 bp upstream
Tssr75113	transcription start site region 75113	1889 bp upstream
Tssr75114	transcription start site region 75114	1729 bp upstream
Tssr75115	transcription start site region 75115	1667 bp upstream
Tssr75116	transcription start site region 75116	1627 bp upstream