rs32425134 SNP Detail

Summary

• ID
  rs32425134
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19433366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATC CCTCGTTGTT GATTCCTCCA
  S
  CACAGGTGAA CTCTTTCCAT TCCAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss48163994	NES11834323	PERLEGEN	MM_PANEL2	f	SNP		C	G	C	C	G	G	G		C	C		G
ss148481739	ENSMUSSNP2291154	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C				G
ss322117528	CHEV_7_20284790	CHEVERUD	SCREENING_POP	f	SNP									G			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs32425134					SNP	C	C	G	C	C	G	G	G	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163994	NES11834323	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19433366 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	mRNA-UTR
Cpgi18508	CpG island 18508	640 bp distal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57	1522 bp distal
Gm71725	predicted gene, 71725	within coordinates
Rr643242	regulatory region 643242	544 bp distal
Rr643243	regulatory region 643243	1145 bp distal
Rr643244	regulatory region 643244	within coordinates
Rr643245	regulatory region 643245	889 bp proximal
Rr643246	regulatory region 643246	1815 bp proximal
Tomm40	translocase of outer mitochondrial membrane 40	1872 bp downstream
Tssr2122	transcription start site region 2122	1776 bp upstream
Tssr64894	transcription start site region 64894	1943 bp downstream
Tssr64895	transcription start site region 64895	1864 bp downstream
Tssr64896	transcription start site region 64896	1840 bp downstream
Tssr64897	transcription start site region 64897	1868 bp upstream
Tssr71000	transcription start site region 71000	1919 bp upstream
Tssr71001	transcription start site region 71001	1853 bp upstream
Tssr71002	transcription start site region 71002	1834 bp upstream
Tssr71003	transcription start site region 71003	1806 bp upstream
Tssr71004	transcription start site region 71004	1788 bp upstream
Tssr71005	transcription start site region 71005	1443 bp upstream
Tssr71006	transcription start site region 71006	1410 bp upstream
Tssr71007	transcription start site region 71007	1348 bp upstream
Tssr71008	transcription start site region 71008	1242 bp upstream
Tssr71009	transcription start site region 71009	1180 bp upstream
Tssr71010	transcription start site region 71010	1060 bp upstream
Tssr71011	transcription start site region 71011	1036 bp upstream
Tssr71012	transcription start site region 71012	1006 bp upstream
Tssr71013	transcription start site region 71013	378 bp upstream
Tssr71014	transcription start site region 71014	153 bp downstream
Tssr71015	transcription start site region 71015	278 bp downstream
Tssr71016	transcription start site region 71016	514 bp downstream
Tssr71017	transcription start site region 71017	963 bp downstream
Tssr71018	transcription start site region 71018	1004 bp downstream