rs32425138 SNP Detail

Summary

• ID
  rs32425138
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19433480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGAAATG GGTGGGTGGG
  GGCTAAGAGG CTCAGCTTCT GGGGTGAAGA TCGTTGTTCT GGGATCCCTC GTTGTTGATT
  CCTCCACCAC AGGTGAACTC TTTCCATTCC AAGGCTGGGA CGTGCTCCAG TTCCTTCAGG
  AGCTGTTCAG TGGTGGCTCC CGATGGGTTT GAAGCCATAC ATTAAGCCAA GCCCTGGGAA
  R
  CCAAGCGTTG ATGCTCCTGA TCTGTTTCTG GCGATTGCCA GATGTGTCAC CTTGGGAGGG
  AAGAGCTACC CCTACAGAGC ACATTTTAAA AAGTTGTTTT GAGATAAGAT TCTCAGGCTG
  CCCTCTAACC CACAAAGGTC CTTCTGCCTC TGCTGTAGCA TGCTGGGACT GCAGGTGTGC
  ACCCCTGCAT GTGCATTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48163998	NES11834325	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	G	A	A	A	G	G	G	G	A
ss148481748	ENSMUSSNP2473330	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32425138					SNP	G	G	A	A	A	G	G	A	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163998	NES11834325	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19433480 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	mRNA-UTR
Cpgi18508	CpG island 18508	754 bp distal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57	1636 bp distal
Gm71725	predicted gene, 71725	within coordinates
Rr643242	regulatory region 643242	658 bp distal
Rr643243	regulatory region 643243	1259 bp distal
Rr643244	regulatory region 643244	within coordinates
Rr643245	regulatory region 643245	775 bp proximal
Rr643246	regulatory region 643246	1701 bp proximal
Tomm40	translocase of outer mitochondrial membrane 40	1758 bp downstream
Tssr2122	transcription start site region 2122	1890 bp upstream
Tssr64895	transcription start site region 64895	1978 bp downstream
Tssr64896	transcription start site region 64896	1954 bp downstream
Tssr64897	transcription start site region 64897	1754 bp upstream
Tssr71001	transcription start site region 71001	1967 bp upstream
Tssr71002	transcription start site region 71002	1948 bp upstream
Tssr71003	transcription start site region 71003	1920 bp upstream
Tssr71004	transcription start site region 71004	1902 bp upstream
Tssr71005	transcription start site region 71005	1557 bp upstream
Tssr71006	transcription start site region 71006	1524 bp upstream
Tssr71007	transcription start site region 71007	1462 bp upstream
Tssr71008	transcription start site region 71008	1356 bp upstream
Tssr71009	transcription start site region 71009	1294 bp upstream
Tssr71010	transcription start site region 71010	1174 bp upstream
Tssr71011	transcription start site region 71011	1150 bp upstream
Tssr71012	transcription start site region 71012	1120 bp upstream
Tssr71013	transcription start site region 71013	492 bp upstream
Tssr71014	transcription start site region 71014	39 bp downstream
Tssr71015	transcription start site region 71015	164 bp downstream
Tssr71016	transcription start site region 71016	400 bp downstream
Tssr71017	transcription start site region 71017	849 bp downstream
Tssr71018	transcription start site region 71018	890 bp downstream