rs32425759 SNP Detail

Summary

• ID
  rs32425759
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82223200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCTTGTA CCTATAGCGA
  CCCGGGAGGC GGAATGTCAC GGGACAACCC TTCTTGAGCA ACCAATCAGA ATCCCCTAGC
  AACGCCGTGC CCTCCCTCTA TGCCCCAGCT CCCAGCCTCC AAAAGCTCCG CCCATCTAAG
  CTCGCGTTCT GCGCGTTCCC GAGGCGCGCT CCCGTGGGAA GTCGGCTTGG GCGCCCTGTG
  Y
  GCGCGCCGCT GTGCCTCGGG TCTGGTTGGA GTCCTCCGTC CTCCGCCCCA GAGGGCGGGG
  GTGGTGGCCC GCACTGCCCG TGCTCAGTAA GTAGCTGTGC AGTGAATTCC TACAGAGGGC
  GATACCTTGC TCTTTTTTTG TTTGTTTGTT TGTTTGTTTG TTTGTTTTAT TTTGTTTTGT
  TTCTTCGAGA CAGGGTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss39401657	mCV23873709	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148231432	ENSMUSSNP4041618	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs32425759					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82223200 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7419	CpG island 7419	within coordinates
Cpgi7420	CpG island 7420	1742 bp proximal
Naga	N-acetyl galactosaminidase, alpha	217 bp upstream
Pheta2	PH domain containing endocytic trafficking adaptor 2	within coordinates
Rr506479	regulatory region 506479	30 bp distal
Rr506480	regulatory region 506480	within coordinates
Rr506481	regulatory region 506481	105 bp proximal
Rr506482	regulatory region 506482	1369 bp proximal
Tssr4669	transcription start site region 4669	124 bp upstream
Tssr135542	transcription start site region 135542	1979 bp upstream
Tssr135543	transcription start site region 135543	208 bp upstream
Tssr135544	transcription start site region 135544	145 bp upstream
Tssr135545	transcription start site region 135545	135 bp upstream