rs32425864 SNP Detail

Summary

• ID
  rs32425864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19433694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGATCT GTTTCTGGCG
  ATTGCCAGAT GTGTCACCTT GGGAGGGAAG AGCTACCCCT ACAGAGCACA TTTTAAAAAG
  TTGTTTTGAG ATAAGATTCT CAGGCTGCCC TCTAACCCAC AAAGGTCCTT CTGCCTCTGC
  TGTAGCATGC TGGGACTGCA GGTGTGCACC CCTGCATGTG CATTTTCCAC TCTCAAGCCA
  Y
  TTCTCTTTTC TTTTTCCTCA TAAAAGCAGA AGAGCAGGAG CTGGAGAGAT GACTCAGAGG
  TTAGGAGCAC TGACTGCATT TCACAGGACC TAGGTTCAAA ATCGCAGCAC CCACACAGCA
  GCTCACAACT GTAACACCAA GATCTGCTAC CCTCACGAAG GCATACATGC AGGCAAAACA
  CTAATGCACA TAAAAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48164004	NES11834207	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	T	T	C	C	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32425864					SNP	T	C	C	C	T	T	T	C	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48164004	NES11834207	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19433694 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	mRNA-UTR
Cpgi18508	CpG island 18508	968 bp distal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57	1850 bp distal
Gm71725	predicted gene, 71725	within coordinates
Rr643242	regulatory region 643242	872 bp distal
Rr643243	regulatory region 643243	1473 bp distal
Rr643244	regulatory region 643244	91 bp distal
Rr643245	regulatory region 643245	561 bp proximal
Rr643246	regulatory region 643246	1487 bp proximal
Tomm40	translocase of outer mitochondrial membrane 40	1544 bp downstream
Tssr64897	transcription start site region 64897	1540 bp upstream
Tssr71005	transcription start site region 71005	1771 bp upstream
Tssr71006	transcription start site region 71006	1738 bp upstream
Tssr71007	transcription start site region 71007	1676 bp upstream
Tssr71008	transcription start site region 71008	1570 bp upstream
Tssr71009	transcription start site region 71009	1508 bp upstream
Tssr71010	transcription start site region 71010	1388 bp upstream
Tssr71011	transcription start site region 71011	1364 bp upstream
Tssr71012	transcription start site region 71012	1334 bp upstream
Tssr71013	transcription start site region 71013	706 bp upstream
Tssr71014	transcription start site region 71014	162 bp upstream
Tssr71015	transcription start site region 71015	32 bp upstream
Tssr71016	transcription start site region 71016	186 bp downstream
Tssr71017	transcription start site region 71017	635 bp downstream
Tssr71018	transcription start site region 71018	676 bp downstream