rs32425866 SNP Detail

Summary

• ID
  rs32425866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19433717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGATGTG TCACCTTGGG
  AGGGAAGAGC TACCCCTACA GAGCACATTT TAAAAAGTTG TTTTGAGATA AGATTCTCAG
  GCTGCCCTCT AACCCACAAA GGTCCTTCTG CCTCTGCTGT AGCATGCTGG GACTGCAGGT
  GTGCACCCCT GCATGTGCAT TTTCCACTCT CAAGCCACTT CTCTTTTCTT TTTCCTCATA
  R
  AAGCAGAAGA GCAGGAGCTG GAGAGATGAC TCAGAGGTTA GGAGCACTGA CTGCATTTCA
  CAGGACCTAG GTTCAAAATC GCAGCACCCA CACAGCAGCT CACAACTGTA ACACCAAGAT
  CTGCTACCCT CACGAAGGCA TACATGCAGG CAAAACACTA ATGCACATAA AAAAAAAAAA
  AAAAAAAAAA AAAGACAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48164006	NES11834208	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	G	A	A	A	A	G	G	A
ss148481763	ENSMUSSNP3165705	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32425866					SNP	G	G	A	A	A	G	G	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48164006	NES11834208	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19433717 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	mRNA-UTR
Cpgi18508	CpG island 18508	991 bp distal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57	1873 bp distal
Gm71725	predicted gene, 71725	within coordinates
Rr643242	regulatory region 643242	895 bp distal
Rr643243	regulatory region 643243	1496 bp distal
Rr643244	regulatory region 643244	114 bp distal
Rr643245	regulatory region 643245	538 bp proximal
Rr643246	regulatory region 643246	1464 bp proximal
Tomm40	translocase of outer mitochondrial membrane 40	1521 bp downstream
Tssr64897	transcription start site region 64897	1517 bp upstream
Tssr71005	transcription start site region 71005	1794 bp upstream
Tssr71006	transcription start site region 71006	1761 bp upstream
Tssr71007	transcription start site region 71007	1699 bp upstream
Tssr71008	transcription start site region 71008	1593 bp upstream
Tssr71009	transcription start site region 71009	1531 bp upstream
Tssr71010	transcription start site region 71010	1411 bp upstream
Tssr71011	transcription start site region 71011	1387 bp upstream
Tssr71012	transcription start site region 71012	1357 bp upstream
Tssr71013	transcription start site region 71013	729 bp upstream
Tssr71014	transcription start site region 71014	185 bp upstream
Tssr71015	transcription start site region 71015	55 bp upstream
Tssr71016	transcription start site region 71016	163 bp downstream
Tssr71017	transcription start site region 71017	612 bp downstream
Tssr71018	transcription start site region 71018	653 bp downstream