rs32427679 SNP Detail

Summary

• ID
  rs32427679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63131696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC TCTCCAGCGT AGATAATCGC
  R
  TATCTCTTTT CCTGTAGCAT AGAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45647247	mCV22875317	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	A
ss146440582	ENSMUSSNP6635498	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32427679					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63131696 () rs orientation: forward

Symbol	Name	Function Class
Col27a1	collagen, type XXVII, alpha 1	550 bp upstream
Cpgi14368	CpG island 14368	513 bp proximal
Rr593488	regulatory region 593488	217 bp proximal
Rr593489	regulatory region 593489	481 bp proximal
Rr593490	regulatory region 593490	1003 bp proximal
Rr593491	regulatory region 593491	1486 bp proximal
Rr593492	regulatory region 593492	1836 bp proximal
Rr593493	regulatory region 593493	1987 bp proximal
Tssr1192	transcription start site region 1192	565 bp upstream
Tssr37533	transcription start site region 37533	629 bp upstream
Tssr37534	transcription start site region 37534	675 bp upstream
Tssr37535	transcription start site region 37535	1943 bp upstream