rs32428308 SNP Detail

Summary

• ID
  rs32428308
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:102123143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGAACTGG AAAAAAATTA
  AAAGAGAGAC TTATAAGCCA TGGTATAAGG AATTTCAGGG ATTCAGGTTT GTCTCTGCAT
  GCTCCTGGTG TTCTCTGTCC CAGTCTGGTG GAGTCTGTGT CTTGGTTTTT TTTCAGTTAG
  GGAGCCAGAA AGCTTGATTT GCCCTCTAAC ATCTGTAGAA CTCTGATAAT TAAAGAAAAA
  K
  GTTTAAGTGT TATCCTTAGA CTATACAGGG GGGCCTATGC CTAGAATCTT AGCACTCTGG
  AGGCTGAGGC AGGAGGATTA AAAGTTTGAA AAAAAGTCTT AAGCTTCAAA ATGAGGCTCT
  GTCTCTAAAA ACAAAACAAA AGAAAACAAA AGAAAAAGAA ACTTTCTGAC CTACTTGTAA
  GCTCCCTTCC ACCCCCTGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49352277	NES12571379	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T	T	T	T	T	T	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32428308					SNP	G	T	T	T	T	T	T	T	T	T	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49352277	NES12571379	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:102123143 () rs orientation: forward

Symbol	Name	Function Class
Lmo7	LIM domain only 7	within coordinates
Rr296718	regulatory region 296718	within coordinates
Tssr126927	transcription start site region 126927	1662 bp downstream
Tssr126928	transcription start site region 126928	1582 bp downstream
Tssr126929	transcription start site region 126929	1571 bp downstream
Tssr126930	transcription start site region 126930	1380 bp downstream
Tssr126931	transcription start site region 126931	1178 bp upstream
Tssr126932	transcription start site region 126932	1762 bp upstream