rs32431490 SNP Detail

Summary

• ID
  rs32431490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76573772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCT TGGGCTGGTT TCTTTTCTAT
  R
  GGACAAGAAC ATCAGGGTAT CTTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39403127	mCV23229437	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		A
ss63562403	NES17020677	PERLEGEN	MM_PANEL2	f	SNP	A			A	G	A	G		A	A	G	A		A	G	A	A		G
ss148166242	ENSMUSSNP6760714	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							A
ss325022371	CHEV_15_76520002	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32431490					SNP	A	A	G	A	G	A	G	A	A	A	G	A	G	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63562403	NES17020677	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76573772 () rs orientation: forward

Symbol	Name	Function Class
Ppp1r16a	protein phosphatase 1, regulatory subunit 16A	within coordinates
Rr504821	regulatory region 504821	402 bp distal
Rr504822	regulatory region 504822	32 bp distal
Tssr131814	transcription start site region 131814	986 bp upstream
Tssr131815	transcription start site region 131815	1012 bp upstream
Tssr131816	transcription start site region 131816	1666 bp upstream