rs32439057 SNP Detail

Summary

• ID
  rs32439057
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:10980116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCCCAT CCCAGAATCT
  ATAAAGAAAA AGGATTAAAT TTGCCACCAA AACACCATTA TGCTACCTGC TATAAGTTGA
  CACAGATAGT AACATAATTT GGGGGCTGGA GAAGCGGTTC TGCGGTTAAG AACACTGGCT
  GTTTCCCAGA GGACTGACTT TTGCTGCCCA GCGTTCACGT GTCACCTTAC AGCCATCTTG
  Y
  CCTCAGATAC AACACCCTCT TCTGGCCTCT GCAGGCACCA GGCATGCCTA CACTGCACAG
  ACACACATGC AGGCAAAAAA CTCGTACCAA TTACAAAATA AAATTTAAAA ATTTAAAGCT
  TCTTACTTAT TTAATCTTTT TGCTTTAGGA GGTTTTTTGT TTGCGTCTAT ATATTTTGTT
  ATTGTTGTTG TCATTGTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39402902	mCV24566915	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147066938	ENSMUSSNP3131336	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs32439057					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:10980116 () rs orientation: forward

Symbol	Name	Function Class
Amacr	alpha-methylacyl-CoA racemase	1759 bp upstream
C1qtnf3	C1q and tumor necrosis factor related protein 3	within coordinates
Cpgi6946	CpG island 6946	1311 bp proximal
Gm34315	predicted gene, 34315	within coordinates
Gm52174	predicted gene, 52174	1511 bp upstream
Rr301970	regulatory region 301970	within coordinates
Rr311562	regulatory region 311562	1084 bp proximal
Rr390344	regulatory region 390344	1871 bp downstream
Tssr130700	transcription start site region 130700	1717 bp upstream
Tssr130701	transcription start site region 130701	1750 bp upstream