rs32439347 SNP Detail

Summary

• ID
  rs32439347
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:76618855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGTCATT CATTCCTTTG
  AAAGCCAGAA CTAAGTGAGG GGTCCGGGAG TGTAGGAGCC CACATGAGGC TTCCCCAGGG
  GCTCTGGTCT CTCTAAAAAG GCTCTTTCTT TCTCTTCTTC TTCCCTGCCC CTCTCACCGT
  GTGCTTGGAC CCTGCGGTGG TATCAGCAGC CAGAGCAGTG GGAATGAAGG TGAGTCAGGG
  R
  CTCCAGGCAC TGGAAGGAGG GACTGTGGGT GGCACTGTCC AGACTTCTCC CCTGGGGACC
  CTTTCGTACC CTCTTCCTTA CAGCAGCACC CCGTGTTGGC CTGCGTCTTC TCATTTTTCC
  CTCTTGGGGT ATATAGGCTT TTGGGGGGGT GGGGACCAGA TCTCAGCCTT GCCACCATAA
  AACTCCTCAC TTCAGGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47166576	NES11227752	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32439347					SNP	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47166576	NES11227752	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76618855 () rs orientation: forward

Symbol	Name	Function Class
Plekhg3	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	Intron
Rr387451	regulatory region 387451	1143 bp downstream
Rr468206	regulatory region 468206	1167 bp distal
Tssr113980	transcription start site region 113980	542 bp downstream
Tssr113981	transcription start site region 113981	514 bp downstream
Tssr113982	transcription start site region 113982	1023 bp upstream