rs32439349 SNP Detail

Summary

• ID
  rs32439349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:76619086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACTGTCC AGACTTCTCC
  CCTGGGGACC CTTTCGTACC CTCTTCCTTA CAGCAGCACC CCGTGTTGGC CTGCGTCTTC
  TCATTTTTCC CTCTTGGGGT ATATAGGCTT TTGGGGGGGT GGGGACCAGA TCTCAGCCTT
  GCCACCATAA AACTCCTCAC TTCAGGGAAA GCCAGGATTG GGCATTTAGG AGTAGATTTT
  Y
  CTACAAAGCT ATTTCTAGCC GCCTACTGGA GGGGTTGCCC GCAAGGCAGG TGACAAGGTG
  GGGGGTCTTC TGCTCTGAAC AGCATGCAGG CAGTGCTGGA GCCCTCTTGG ACTTTGGGCA
  GCCAGCCCAT GCACAGAAGC AGCAGCCAGA GGCTGAGAGG GCCGCCAGGG AAGAGCTTGA
  GGAAGAGGAG GAGCTGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47166579	NES11227753	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32439349					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47166579	NES11227753	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76619086 () rs orientation: forward

Symbol	Name	Function Class
Plekhg3	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	Intron
Rr387451	regulatory region 387451	1374 bp downstream
Rr468206	regulatory region 468206	1398 bp distal
Tssr113980	transcription start site region 113980	773 bp downstream
Tssr113981	transcription start site region 113981	745 bp downstream
Tssr113982	transcription start site region 113982	792 bp upstream