rs32439716 SNP Detail

Summary

• ID
  rs32439716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45025655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCTCTG GTGGTATCTG
  TCCTTGGTTA TATGTAAAGA CTTATAAGCC TTAAGCAGCA GATTGGAGTA CTATCATTCA
  GCCCTCAATG GGACTACCTT CAGCCTTTCT TCAGGACTGT GCCAGGCTGG CCCCAGCTTC
  CTCAGGGCCC ACCATACTCA AAGCTCTCCC AGCTGCCTTC CATCCAGAAA TGTGTGGGTA
  Y
  CAACTGCTGA TGGCTGGCAT CCTGCCTCTT TGCCTGCTGT TCTCTCACTT AAAGATGCAG
  CCTGTTATGA GAGCCAGGGC TTCCCTCTCA CTTGTAAAGC AGCTACAGTG CCTGGGAGAA
  CAGCCTCTAC TTCAGGTTAT AACACGTGCA GTATACCAAA GGGAGTTGAG CAGTAGGAAG
  TGGCCTTTTG GAAAGACAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46145383	mCV22694954	ABI	CRAMUS_MOUSE	f	SNP	C	T	C					C		C
ss61003645	NES16116949	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T	C	C	C	T	C	T	T
ss149134186	ENSMUSSNP2027174	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32439716					SNP	C	T	C	C	C	C	C	C	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003645	NES16116949	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45025655 () rs orientation: forward

Symbol	Name	Function Class
Snrnp70	small nuclear ribonucleoprotein 70 (U1)	222 bp downstream
Tssr66520	transcription start site region 66520	939 bp upstream