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rs32440734 SNP Detail
Summary
  • ID
    rs32440734
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:30116246 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TGAGTTCCTG GACAGGCAGG GCTACCCAAA GAAACCCTGT
    CTACAAGCAA ACAAACAAAC AAAAACAAAA CAAAACAAAA AAGAATCTCA ATATTGGCCA
    Y
    CTGATGTCCA GAAGACCCCG GGCTGTCTAG TTTCTGAGAG CCAGGAAACT TTAGGGCAAA
    TGTCAGCCTG ATTTTTTTAT CCTTCGGTAT CTTGGTTGA                       
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss46146030 mCV22813296 ABI CRAMUS_MOUSE f SNP T C T C
ss148677358 ENSMUSSNP1286427 ENSEMBL ENSEMBL_Sanger f SNP T C
ss322134084 CHEV_7_31201840 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs32440734 SNP T C T C T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:30116246 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Hcst hematopoietic cell signal transducer 891 bp downstream
Rr155980 regulatory region 155980 1646 bp distal
Rr167465 regulatory region 167465 1645 bp distal
Rr167466 regulatory region 167466 1154 bp proximal
Tssr65706 transcription start site region 65706 1287 bp downstream
Tssr65707 transcription start site region 65707 1080 bp downstream
Tssr65708 transcription start site region 65708 513 bp upstream
Tssr65709 transcription start site region 65709 568 bp upstream
Tssr65710 transcription start site region 65710 1337 bp upstream
Tssr71738 transcription start site region 71738 562 bp downstream
Tssr71739 transcription start site region 71739 642 bp downstream
Tssr71740 transcription start site region 71740 749 bp downstream
Tyrobp TYRO protein tyrosine kinase binding protein within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory