rs32441598 SNP Detail

Summary

• ID
  rs32441598
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45571539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATAATGA CTAGGTGGGC
  AGATGCTAAT TTAAAAAGGA TAATCCTGGA AAGCTTCTTG GAGGAGGTGC TATTTGACCT
  GAGTCATTTG GATACTAGGG AGAAAATGTC CCAAGCTTTG AGAAGAAACG CTGGCCGTTT
  GGAGAGCAGA CAGAATGGCC AGTGTGTCTG GAGCACAGAG AGCGTAGGGT GTGGTGAGCG
  K
  GACAGCAGAG GATTCACTTG GAAGTCATGG AGGAATCAGG ATTTTACTGT AAGTGCTGTG
  GGAGGCCATT AGAATTCTCA CAGCACTCTA GTCCCAGGGT TATAGTGTGA ACTATCATTT
  ATTCTCAGAG TTAGGGGCTG TGGGTGATGA ACTAGGACTG ATGAAGTTAG GGCTGGGGAT
  CTGGATGATG GTGCTAGAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46145660	mCV23847864	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss149150493	ENSMUSSNP5983647	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32441598					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45571539 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19109	CpG island 19109	851 bp proximal
Cpgi19110	CpG island 19110	1851 bp proximal
Emp3	epithelial membrane protein 3	711 bp upstream
Gm45442	predicted gene 45442	25 bp downstream
Odad1	outer dynein arm docking complex subunit 1	1957 bp upstream
Rr368318	regulatory region 368318	641 bp upstream
Rr368319	regulatory region 368319	861 bp upstream
Rr400324	regulatory region 400324	473 bp downstream
Rr400325	regulatory region 400325	1242 bp upstream
Rr646609	regulatory region 646609	244 bp distal
Rr646610	regulatory region 646610	within coordinates
Rr646611	regulatory region 646611	1067 bp proximal
Tssr2257	transcription start site region 2257	725 bp downstream
Tssr2258	transcription start site region 2258	1994 bp downstream
Tssr66661	transcription start site region 66661	1086 bp upstream
Tssr66662	transcription start site region 66662	1419 bp upstream
Tssr72490	transcription start site region 72490	1922 bp upstream
Tssr72491	transcription start site region 72491	1694 bp upstream
Tssr72492	transcription start site region 72492	1479 bp upstream
Tssr72493	transcription start site region 72493	1447 bp upstream
Tssr72494	transcription start site region 72494	1437 bp upstream
Tssr72495	transcription start site region 72495	1421 bp upstream
Tssr72496	transcription start site region 72496	1335 bp upstream
Tssr72497	transcription start site region 72497	1232 bp upstream
Tssr72498	transcription start site region 72498	988 bp upstream
Tssr72499	transcription start site region 72499	803 bp upstream
Tssr72500	transcription start site region 72500	668 bp upstream
Tssr72501	transcription start site region 72501	1073 bp downstream
Tssr72502	transcription start site region 72502	1304 bp downstream