rs32448854 SNP Detail

Summary

• ID
  rs32448854
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31206364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCCGCCGG TGTCTGTCCC
  TTTGGCCAGT CGGAAGCTCA GATTTTTGTC CCTGAAGCTT CCCCGGGCCC TGTGCCTGCG
  GGGATGGTGT TGTCCAGTAC TCACGTAGTG CAGGCCACTA GCACCTTCGC CCTGCCCACA
  TTCAGAGTCC TTTGAAATTT GATCTCCTTG CTTTTGAATA ATTTTAAATA GTGCTTCCCA
  S
  ACGAGTCCCA GGGTTCTTCT GCCAGCTCTC CTTGCACGAA TGCTGTGCGT GGTGCAATGG
  CACGACTATC TATCTATCTA TCTATCTATC TATCTATCTA TCTATCTATC TATCTATCTA
  TCTATCTATC TATCTAAATA TATAGTGATG CTTGAGTACG CTGTGTACCT GCAGCCCTTT
  AACACTTGCC AAACCATGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss45807471	mCV22340604	ABI	CRAMUS_MOUSE	f	SNP	C	G					G	G
ss47667735	NES10246937	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	G	C	G		G	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs32448854					SNP	C	G	C	G	C	G	G	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47667735	NES10246937	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31206364 () rs orientation: forward

Symbol	Name	Function Class
Atraid	all-trans retinoic acid induced differentiation factor	within coordinates
Cpgi15696	CpG island 15696	137 bp distal
Rr112650	regulatory region 112650	1437 bp proximal
Rr125009	regulatory region 125009	within coordinates
Rr399020	regulatory region 399020	265 bp downstream
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	96 bp upstream
Tssr45658	transcription start site region 45658	347 bp downstream
Tssr45659	transcription start site region 45659	9 bp upstream
Tssr50520	transcription start site region 50520	1153 bp upstream
Tssr50521	transcription start site region 50521	1134 bp upstream
Tssr50522	transcription start site region 50522	1011 bp upstream
Tssr50523	transcription start site region 50523	982 bp upstream
Tssr50524	transcription start site region 50524	744 bp upstream