rs32448860 SNP Detail

Summary

• ID
  rs32448860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31206162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAGCCTCG CGCTCGGTTC
  TCGCGAGCTG TCAAGACGGT GGAAAGCAGT GGGAAATGGC GTCTCGGGAG TCAGGCGGCT
  CTCGGGCGGC CGCCCTGCTC CTGGTTCTGG GCGTGGAGAG GGCCCTGGCT CTACCTGAGG
  TACAGAAGAA AGTTTGAGAT CTGGCTGAAG AAGGTTGCTG GCCGTCAGCC CGGAATCCAG
  Y
  TCGCCCGCCG GTGTCTGTCC CTTTGGCCAG TCGGAAGCTC AGATTTTTGT CCCTGAAGCT
  TCCCCGGGCC CTGTGCCTGC GGGGATGGTG TTGTCCAGTA CTCACGTAGT GCAGGCCACT
  AGCACCTTCG CCCTGCCCAC ATTCAGAGTC CTTTGAAATT TGATCTCCTT GCTTTTGAAT
  AATTTTAAAT AGTGCTTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47667741	NES10246934	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32448860					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47667741	NES10246934	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31206162 () rs orientation: forward

Symbol	Name	Function Class
Atraid	all-trans retinoic acid induced differentiation factor	within coordinates
Cpgi15696	CpG island 15696	within coordinates
Rr112650	regulatory region 112650	1639 bp proximal
Rr125009	regulatory region 125009	within coordinates
Rr399020	regulatory region 399020	63 bp downstream
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	within coordinates
Tssr45658	transcription start site region 45658	145 bp downstream
Tssr45659	transcription start site region 45659	211 bp upstream
Tssr50520	transcription start site region 50520	951 bp upstream
Tssr50521	transcription start site region 50521	932 bp upstream
Tssr50522	transcription start site region 50522	809 bp upstream
Tssr50523	transcription start site region 50523	780 bp upstream
Tssr50524	transcription start site region 50524	542 bp upstream