rs32449629 SNP Detail

Summary

• ID
  rs32449629
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31205976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGGTCTG TCCACCGCGA
  GCAAGCGCAG GACAGGAGCT CAGAATTCCG CGAGCAGCCC GAACCTGCGG GCAAATTACG
  CCTCGGGCTC CACGGCTCGT GCCCCGGGCG GACCAGGCCA CGCCCCAGAG TGACAGGATT
  TGGAAGCTAA GCCTCGCCTC AAGGCTGGCG CGTGACACGC TGGGGGCGGA GCCTCGCGCT
  S
  GGTTCTCGCG AGCTGTCAAG ACGGTGGAAA GCAGTGGGAA ATGGCGTCTC GGGAGTCAGG
  CGGCTCTCGG GCGGCCGCCC TGCTCCTGGT TCTGGGCGTG GAGAGGGCCC TGGCTCTACC
  TGAGGTACAG AAGAAAGTTT GAGATCTGGC TGAAGAAGGT TGCTGGCCGT CAGCCCGGAA
  TCCAGCTCGC CCGCCGGTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47667750	NES10246931	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32449629					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47667750	NES10246931	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31205976 () rs orientation: forward

Symbol	Name	Function Class
Atraid	all-trans retinoic acid induced differentiation factor	8 bp upstream
Cpgi15696	CpG island 15696	within coordinates
Rr112650	regulatory region 112650	1825 bp proximal
Rr125009	regulatory region 125009	within coordinates
Rr399020	regulatory region 399020	within coordinates
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	within coordinates
Tssr45658	transcription start site region 45658	within coordinates
Tssr45659	transcription start site region 45659	397 bp upstream
Tssr50520	transcription start site region 50520	765 bp upstream
Tssr50521	transcription start site region 50521	746 bp upstream
Tssr50522	transcription start site region 50522	623 bp upstream
Tssr50523	transcription start site region 50523	594 bp upstream
Tssr50524	transcription start site region 50524	356 bp upstream