rs32449654 SNP Detail

Summary

• ID
  rs32449654
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:91260579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCGGCCCG CGAGTGCCCA
  GCTCCGCCAC CCTCAGGGGC ACATGCTCCC TCCAGGCTCC TCCATTGGGC TTCCCGGGGC
  GGCCGGGGCA AGTTTGCATG CATACTGAGG GATTGGGGCA GTGACCAGTG ACCCAGGCAC
  AAACTGGGGT CACTTTGGAC ATATATGCGT GCGCCAAGTG TAAGTCTAGA TATGCACACA
  R
  AATACCTGTT TTTTCAAGAA AATGTAAAGG CTTTTTTCCC CTCGCCCAAA GCCCAAAGGT
  CCTGTCTGTC CCTCGACGGA AAACTAAAAG CTTAGTCCCG CTGCGCCTTT CCACCTCCCT
  AGACAGAATG GGAGAGCTAA ATAAGCCCCG GAGTACCTGT GCGAGGTGCT ATACCCTGCT
  TCAGATGTGA AGTAGGAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45648977	mCV25324422	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32449654					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:91260579 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14444	CpG island 14444	within coordinates
Cpgi14445	CpG island 14445	553 bp proximal
Elavl2	ELAV like RNA binding protein 1	within coordinates
Mir6402	microRNA 6402	942 bp downstream
Rr595258	regulatory region 595258	319 bp distal
Rr595259	regulatory region 595259	676 bp distal
Rr595260	regulatory region 595260	within coordinates
Rr595261	regulatory region 595261	603 bp proximal
Rr595262	regulatory region 595262	1621 bp proximal
Tssr42416	transcription start site region 42416	370 bp upstream
Tssr42417	transcription start site region 42417	342 bp upstream
Tssr42418	transcription start site region 42418	295 bp upstream