rs32450258 SNP Detail

Summary

• ID
  rs32450258
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144979628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTCCCCACC CTGTTCCTCT TTTGTGGATA TTTGGGGAAT ATCCCCAATG CTCCATCTCT
  TGTGTTGCCA AACACAGTCT TGTCAAAGGC ACAGAAGACA GTTTCCCTAG GTGGTGAACC
  TAGATAGAGA GTAGGGCTGC TGGAGAGAGG TGGTGTGCGT TTTTTCATTT TCACCGGGTC
  CTGTACAGCG AACTCTAGAC TCGCAGGGCC ACATCTGCAG TGTCGTTTCA TTTCTGCATT
  TCCTCTTATA ACTATTCTTT TCTCCTTTCC CCCTTCTCTT TTAAATTTTT AAAAATTTCG
  K
  TTTTTTTAAT GTATTCTTTA TCTTTATTTC ATGTTCATTG GTGTTTTGCC TGAATTTATG
  TCTGTGTGAG GGTGTAGGAT CCCCTGCAAC TAGAGTTACA GACAGTTGTG AGCTGCCGTG
  TGGATGCTGG GAATTGAACA AATTGAACTC AGGACCTCTG GAAGAGCAGC CAGCACTCTT
  AACGGCTAAG CCATTTCTCC AGTCTTTAAG CTTCCTTTTT GGGACAATGT CTTATGCAGC
  CCAGGCTGGC CTGAAGCTTA TTGTATAGCT AAGGATGACC TTGGAATCCC ATGCTTCTGC
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45650303	mCV22807724	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss147850279	ENSMUSSNP4121837	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32450258					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144979628 () rs orientation: forward

Symbol	Name	Function Class
Rr398674	regulatory region 398674	1489 bp upstream
Rr604348	regulatory region 604348	1270 bp proximal
Tssr40207	transcription start site region 40207	1672 bp upstream
Tssr44535	transcription start site region 44535	1378 bp downstream