rs32450435 SNP Detail

Summary

• ID
  rs32450435
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31205262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGCTTGC CTTGCGTCGG
  TGGTTCGGCC AGGGCTACCA AAGTTCCTAC GTTCTTTCCG AAACCAGCAT TGGTTTTTCC
  CCCTTGGCAA GGCAAAGAAC ATGAGTTAAG GAAGCGTCTT TCCCGCTTCG CGTCCTTGCC
  CGGGCTGCAG AACACTACGC AACATTAAGG TGAAGGGTTC CCAGGCTCGT GTTCTCTTGC
  M
  AGCGTTTGCC CTTCGCCCTC CGATCTTCAC TCCTCCATCA CCCTTACCCT CTCTCGGCTC
  AGCTTTCCCC TTCTCTCCGC ACGTGGCGAA CCCACGACTT TGCACTAGTA TTTAAGACCT
  TCCCCAAAGC CCACACCGAG AGGCTCACCC CGCCCCGCCC CTTCCAGTCC CGCCTCCAGG
  CGACTGAACT CAGTCTCTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47667756	NES10247017	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32450435					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47667756	NES10247017	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31205262 () rs orientation: forward

Symbol	Name	Function Class
Atraid	all-trans retinoic acid induced differentiation factor	722 bp upstream
Cpgi15696	CpG island 15696	within coordinates
D5Jcs306	DNA segment, Chr 5, John C. Schimenti 306	1642 bp distal
Rr125009	regulatory region 125009	within coordinates
Rr399020	regulatory region 399020	536 bp upstream
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	within coordinates
Tssr45658	transcription start site region 45658	709 bp upstream
Tssr45659	transcription start site region 45659	1111 bp upstream
Tssr50520	transcription start site region 50520	51 bp upstream
Tssr50521	transcription start site region 50521	32 bp upstream
Tssr50522	transcription start site region 50522	80 bp downstream
Tssr50523	transcription start site region 50523	96 bp downstream
Tssr50524	transcription start site region 50524	318 bp downstream