rs32451554 SNP Detail

Summary

• ID
  rs32451554
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31204804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAACAGT GGACATGTCT
  TTTAAAAAGG TCTCACATTG CATGGGACTT ATCTGCAATG AAAGGTATTG AGGTTTGTGG
  GTTCATTTCT TTCAGTACTG GGGACAAGAC TTAACTAGGA ATGCCAGAGC TAAGTCCTCA
  CCCTCTTCCC CCTTTGAAAT ATAAGGGAAC ACCTGCAGGG CCAACTGTCA CCAATATCTA
  S
  GGCTTAATAT TCCTCAAGAT CTGAATGGCC TTTCTCATTA AAACAAGATA TCCCACCAGC
  TAAATGTATT GATAAATGCA AATTCAGGAT TTCCAGGCAG ATACCTGGAG CCTGTGGAAT
  GGAAGCATTG GCAGGCTAAT TGAGATGAGC TCTAATTGTC TCTAGTTACC TTTTGAGGAG
  TCGTCACCCA GAGCAATAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47667768	NES10247012	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32451554					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47667768	NES10247012	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31204804 () rs orientation: forward

Symbol	Name	Function Class
Atraid	all-trans retinoic acid induced differentiation factor	1180 bp upstream
Cpgi15696	CpG island 15696	275 bp proximal
D5Jcs306	DNA segment, Chr 5, John C. Schimenti 306	1184 bp distal
Rr125009	regulatory region 125009	within coordinates
Rr399020	regulatory region 399020	994 bp upstream
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	within coordinates
Tssr45658	transcription start site region 45658	1167 bp upstream
Tssr45659	transcription start site region 45659	1569 bp upstream
Tssr50520	transcription start site region 50520	398 bp downstream
Tssr50521	transcription start site region 50521	419 bp downstream
Tssr50522	transcription start site region 50522	538 bp downstream
Tssr50523	transcription start site region 50523	554 bp downstream
Tssr50524	transcription start site region 50524	776 bp downstream