rs32451557 SNP Detail

Summary

• ID
  rs32451557
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31204609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCGGGTA GTACCGATTT
  GGTTCCTCTG CTTCTAGAGT TTCCTGATTA ATTATCTGCG TTGAGAAACC ACGAAGCCTC
  TGGGATAGAG GAAGAAGAGG TAAGCAGACA GGAAAACGCC AAGCCAGCAG TAACACAACT
  TTCATACGAT CCAATTCTAG GAAAAGAACA GTGGCTTTCT ACAAACTCCA CTGATTCACA
  M
  CAGTGGACAT GTCTTTTAAA AAGGTCTCAC ATTGCATGGG ACTTATCTGC AATGAAAGGT
  ATTGAGGTTT GTGGGTTCAT TTCTTTCAGT ACTGGGGACA AGACTTAACT AGGAATGCCA
  GAGCTAAGTC CTCACCCTCT TCCCCCTTTG AAATATAAGG GAACACCTGC AGGGCCAACT
  GTCACCAATA TCTAGGGCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47667771	NES10247011	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32451557					SNP	A	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47667771	NES10247011	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31204609 () rs orientation: forward

Symbol	Name	Function Class
Atraid	all-trans retinoic acid induced differentiation factor	1375 bp upstream
Cpgi15696	CpG island 15696	470 bp proximal
D5Jcs306	DNA segment, Chr 5, John C. Schimenti 306	989 bp distal
Rr125009	regulatory region 125009	within coordinates
Rr399020	regulatory region 399020	1189 bp upstream
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	within coordinates
Tssr45658	transcription start site region 45658	1362 bp upstream
Tssr45659	transcription start site region 45659	1764 bp upstream
Tssr50520	transcription start site region 50520	593 bp downstream
Tssr50521	transcription start site region 50521	614 bp downstream
Tssr50522	transcription start site region 50522	733 bp downstream
Tssr50523	transcription start site region 50523	749 bp downstream
Tssr50524	transcription start site region 50524	971 bp downstream